Table 3.
TE composition in C. oblonga genome assembly.
| Abundance in the assembly | Frequency in total TEs | Frequency in defined class | |
|---|---|---|---|
| Class I | |||
| LTR/Ty3/Gypsy | 48,178 | 46.01 | 50.11 |
| LTR/Ty1/Copia | 41,781 | 39.9 | 43.45 |
| LINE | 5594 | 5.34 | 5.82 |
| Pararetrovirus | 453 | 0.43 | 0.47 |
| Unclassified | 147 | 0.14 | 0.15 |
| Class II | |||
| Helitron | 2224 | 2.12 | 26.34 |
| TIR/hAT | 2446 | 2.34 | 28.97 |
| TIR/MuDR/Mutator | 1452 | 1.39 | 17.2 |
| TIR/PIF/Harbinger | 1377 | 1.32 | 16.3 |
| TIR/EnSpm/CACTA | 931 | 0.89 | 11.03 |
| TIR/Novosib | 8 | 0.01 | 0.09 |
| TIR/unclassified | 6 | 0.01 | 0.07 |
| Ambiguous | 113 | 0.1 | |