TABLE 1.
Distribution by functional category of the genes presented in Results, quantified in the RNA-seq analysis with significant fold changes in mRNA transcript levels in the Synechocystis kpsM mutant versus the wild type
| Functional category and ORF | Gene ID(s) | Description | Fold change (mutant/wt) |
|---|---|---|---|
| Photosynthesis | |||
| ssr2831 | psaE | Photosystem I reaction center subunit IV | 1.8 |
| sll1194 | psbU | Photosystem II 12-kDa extrinsic protein | −1.6 |
| ssr0390 | psaK1 | Photosystem I reaction center subunit X | 1.7 |
| ssr3451 | psbE | Cytochrome b559 alpha subunit | −1.6 |
| sml0008 | psaJ | Photosystem I reaction center subunit IX | 1.7 |
| sll0629 | psaK | Photosystem I subunit X | 1.6 |
| sll0427 | psbO | Photosystem II manganese-stabilizing polypeptide | −1.5 |
| smr0004 | psaI | Photosystem I subunit VIII | 1.6 |
| psbZ | Photosystem II | −1.5 | |
| sll0819 | psaF | Photosystem I reaction center subunit III (PSI-F) | 1.4 |
| sll1867 | psbA3 | Photosystem II D1 protein | −2.1 |
| smr0008 | psbJ | Photosystem II PsbJ protein | −2.0 |
| ssl0563 | psaC | Photosystem I subunit VII | −1.3 |
| smr0005 | psaM | Photosystem I PsaM subunit | 1.4 |
| Oxidative phosphorylation | |||
| sll1324 | atpF | ATP synthase subunit b | 2.2 |
| sll1323 | atpG | ATP synthase subunit b′ | 2.2 |
| sll0223 | ndhB | NAD(P)H dehydrogenase I subunit 2 | 1.5 |
| sll1322 | atpI | ATP synthase subunit a | 1.7 |
| sll1325 | atpD | ATP synthase d subunit | 1.8 |
| sll0522 | ndhE | NADH dehydrogenase subunit 4L | −1.7 |
| slr0851 | ndh | NADH dehydrogenase | 1.4 |
| Carbon metabolism | |||
| slr1945 | pgm | 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase | 1.6 |
| slr1843 | zwf | Glucose-6-phosphate 1-dehydrogenase | 1.4 |
| Motility | |||
| slr1276 | Type IV pilus assembly protein PilO | −1.7 | |
| slr1275 | Type IV pilus assembly protein PilN | −1.8 | |
| sll1694 | hofG | General secretion pathway protein G | −1.5 |
| sll1533 | pilT | Twitching motility protein | −1.8 |
| sll1291 | Twitching motility two-component system response regulator PilG | 2.0 | |
| Amino sugar and nucleotide sugar metabolism | |||
| slr0017 | murA | UDP-N-Acetylglucosamine 1-carboxyvinyltransferase | 2.8 |
| slr1746 | murI | Glutamate racemase | 3.0 |
| slr1423 | murC | UDP-N-Acetylmuramate-alanine ligase | 2.2 |
| Transcription | |||
| sll1689 | sigE; rpoD | Sigma factor E | 1.8 |
| Amino acid metabolism | |||
| slr0528 | murE | UDP-MurNAc-tripeptide synthetase | 1.7 |
| Transporters | |||
| sll0923 | epsB; wzc | Exopolysaccharide export protein | 2.0 |
| sll1581 | gumB | Polysaccharide biosynthesis/export | 1.8 |
| Other signaling and cellular processes | |||
| slr0328 | wzb | Low-mol-wt protein-tyrosine phosphatase | −2.7 |