Table 3.
Interactions of COVID-19 Main Protease (PDB ID:6LU7) amino acid residues with ligands at receptor sites.
| Ligands | Binding affinity, ΔG (kcal/mol) | Amino acids involved and Distance (A°) | |
|---|---|---|---|
| Hydrogen binding interactions | Hydrophobic interactions | ||
| Quadranoside III | −8.6 | LYS A:137 (4.60), ASN A:238 (4.52), GLU A:288 (4.82) | LEU A:272 (4.46) |
| Luteolin-7-glucoside-3′-glucuronide | −8.5 | PHE A:219 (5.16), ASN A:221 (3.75, 3.78, 4.67), ASP A:263 (3.50, 3.90) | LEU A:220 (4.22) |
| Melitric acid A | −8.2 | GLN A:110 (4.80, 5.234), ASN A:151 (4.23), ILE A:249 (3.34) | VAL A:104 (7.12), ILE A:106 (5.62), PHE A:294 (4.40), PRO A:293 (4.44), ILE A:249 (4.77) |