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. 2021 Mar 15;89(6):627–636. doi: 10.1016/j.biopsych.2020.09.010

Table 2.

Statistical Fine Mapping Findings: Potentially Causal Features

Location Gene SNP Weight Set FOCUS PIPa Colocalization
chr1:8412457-8877702 RERE YFS blood .50 True
chr1:36884051-36884179 SNORA63 GTEx nucleus accumbens .70 False
chr1:71861623-72748417 NEGR1 GTEx whole blood 1.00 True
chr1:181452685-181775921 CACNA1E CMC DLPFC splicing .52 False
chr1:197473878-197744623 DENND1B CMC DLPFC .73 True
chr2:58386377-58468515 FANCL CMC DLPFC splicing .80 True
chr4:41992489-42092474 SLC30A9 GTEx cortex .53 False
chr5:87988462-87989789 CTC-467M3.3 GTEx frontal cortex .84 True
chr6:99817347-99842082 COQ3 CMC DLPFC splicing .97 False
chr6:105584224-105617820 BVES-AS1 GTEx amygdala .74 False
chr7:12250867-12282993 TMEM106B GTEx whole blood .61 True
chr7:24836158-25021253 OSBPL3 GTEx pituitary .98 False
chr8:52232136-52722005 PXDNL CMC DLPFC 1.00 False
chr8:61297147-61429354 RP11-163N6.2 GTEx thyroid .92 False
chr9:126605315-126605965 PIGFP2 PsychENCODE DLPFC .94 False
chr11:113280318-113346111 DRD2 GTEx frontal cortex .97 False
chr13:53602875-53626196 OLFM4 CMC DLPFC .99 False
chr14:42076773-42373752 LRFN5 GTEx cerebellum .50 True
chr14:59971779-60043549 CCDC175 GTEx thyroid .61 True
chr14:64550950-64770377 ESR2 GTEx pituitary .59 True
chr14:75319736-75330537 PROX2 GTEx thyroid .72 True
chr16:72146056-72210777 PMFBP1 PsychENCODE DLPFC .96 False
chr17:27401933-27405875 TIAF1 GTEx adrenal gland .75 True

Chr, chromosome; CMC, CommonMind Consortium; DLPFC, dorsolateral prefrontal cortex; GTEx, Genotype-Tissue Expression; PIP, posterior inclusion probability; SNP, single nucleotide polymorphism; YFS, Young Finns Study.

a

PIP estimate of causality.