TABLE 1:
Oligonucleotide substrate names, sequences and visual configurations used in this manuscript.
| Substrate | Oligonucleotide Sequence | Configuration |
|---|---|---|
| Primer Extension | A: 5’ CTG ATG CTG ATG CGC B: 5’ GTA CCC GGG GAT CCG TAC GGC GCA TCA GCA TCA G |
 |
| Single-nucleotide gap | A: 5’ CTG ATG CTG ATG CGC B: 5’ GTA CGG ATC CCC GGG TAC C: 5’ GTA CCC GGG GAT CCG TAC GGC GCA TCA GCA TCA G |
 |
| Downstream oligo displacement | A: 5’ CTG ATG CTG ATG CGC B: 5’ GTA CGG ATC CCC GGG TAC C: 5’ GTA CCC GGG GAT CCG TAC GGC GCA TCA GCA TCA G |
 |
| Nicked | A: 5’ CTG ATG CTG ATG CGC C B: 5’ GTA CGG ATC CCC GGG TAC C: 5’ GTA CCC GGG GAT CCG TAC GGC GCA TCA GCA TCA G |
 |
| 2-nt gap | A: 5’ CTG ATG CTG ATG CGC B: 5’ TAC GGA TCC CCG GGT AC C: 5’ GTA CCC GGG GAT CCG TAC GGC GCA TCA GCA TCA G |
 |
| 3-nt gap | A: 5’ CTG ATG CTG ATG CGC B: 5’ ACG GAT CCC CGG GTA C C: 5’ GTA CCC GGG GAT CCG TAC GGC GCA TCA GCA TCA G |
 |
| 4-nt gap | A: 5’ CTG ATG CTG ATG CGC B: 5’ CGG ATC CCC GGG TAC C: 5’ GTA CCC GGG GAT CCG TAC GGC GCA TCA GCA TCA G |
 |
| Uracil | A: 5’ ATA TAC CGC GUC CGG CCG ATC AAG CTT ATT B: 5’ AAT AAG CTT GAT CGG CCG GGC GCG GTA TAT |
 |
| dRP Lyase | A: 5’-CTG CAG CTG ATG CGC UGT ACG GAT CCC CGG GTA C B: 5’-GTA CCC GGG GAT CCG TAC GGC GCA TCA GCT GCA G |
 |