TABLE 5.
Summary of the number of regions identified and the number of genes (inside brackets) under positive selection for individual (diagonal) method/scenario and between methods/scenarios (off diagonal).
| FST1 | FST2 | FST3 | hapFLK (outgroup – Yak) | hapFLK (outgroup – Bali) | hapFLK (no outgroup) | ROH | |
| FST1 | 888 (1,201) | 101 (171) | 569 (872) | 1 (2) | – | – | 986 (1,012) |
| FST2 | 661 (757) | 107 (173) | 3 (3) | 1 (3) | – | 697 (715) | |
| FST3 | 911 (1,215) | 2 (3) | 2 (3) | 2 (4) | 1,203 (1,194) | ||
| hapFLK (outgroup – Yak) | 24 (30) | 19 (24) | – | 178 (27) | |||
| hapFLK (outgroup – Bali) | 37 (41) | – | |||||
| hapFLK (no outgroup) | 17 (35) | 192 (29) | |||||
| ROH | 4,202 (4,972) |
See “Materials and Methods” for definition of methods (FST, hapFLK or ROH) and scenarios (FST 1 to 3, hapFLK outgroup or no outgroup).