Table 2.
Fitting parameters for the distributions of four-nucleotide chunks
Virus | Entropy | Size | Negative hypergeometric distribution | Pólya distribution | ||||||
---|---|---|---|---|---|---|---|---|---|---|
S4 | (chunks) | K | M | n | C | s | p | n | C | |
A/H1N1 | 5.3515 | 3345 | 2.4536 | 0.7918 | 258 | 0.0057 | 0.4156 | 0.3209 | 259 | 0.0060 |
Ball python nidov. | 5.3385 | 8363 | 2.1873 | 0.7087 | 256 | 0.0043 | 0.4711 | 0.3227 | 256 | 0.0050 |
Dengue | 5.3219 | 2681 | 2.3958 | 0.7561 | 256 | 0.0051 | 0.4270 | 0.3144 | 256 | 0.0055 |
Ebola | 5.4002 | 4741 | 2.3911 | 0.8336 | 256 | 0.0008 | 0.4154 | 0.3462 | 256 | 0.0010 |
Feline-CoV | 5.3357 | 7339 | 2.7359 | 0.8759 | 257 | 0.0011 | 0.3647 | 0.3186 | 257 | 0.0011 |
HCoV-229E | 5.2899 | 6830 | 2.6172 | 0.7907 | 256 | 0.0014 | 0.3772 | 0.3007 | 257 | 0.0013 |
HCoV-HKU1 | 5.1491 | 7482 | 2.7836 | 0.7153 | 260 | 0.0057 | 0.3707 | 0.2506 | 261 | 0.0070 |
HCoV-NL63 | 5.1738 | 6889 | 2.7545 | 0.7344 | 256 | 0.0035 | 0.3754 | 0.2644 | 255 | 0.0042 |
HCoV-OC43 | 5.2854 | 7686 | 2.6510 | 0.7918 | 258 | 0.0027 | 0.3879 | 0.2975 | 257 | 0.0031 |
Hepatitis A | 5.1923 | 1870 | 2.7578 | 0.8180 | 239 | 0.0079 | 0.3546 | 0.2877 | 243 | 0.0075 |
Hepatitis C | 5.3871 | 2412 | 2.4158 | 0.8378 | 254 | 0.0029 | 0.4173 | 0.3454 | 254 | 0.0030 |
Hepatitis D | 4.9309 | 421 | 2.1249 | 0.6739 | 178 | 0.0333 | 0.4566 | 0.3217 | 178 | 0.0342 |
Hepatitis E | 5.3405 | 1794 | 2.3837 | 0.7811 | 254 | 0.0070 | 0.4297 | 0.3251 | 254 | 0.0077 |
HIV-1 | 5.2425 | 2296 | 2.5090 | 0.7853 | 239 | 0.0060 | 0.4090 | 0.3099 | 239 | 0.0066 |
HIV-2 | 5.3114 | 2590 | 2.5607 | 0.8015 | 256 | 0.0030 | 0.3892 | 0.3112 | 256 | 0.0029 |
HRV-A | 5.2618 | 1785 | 2.7530 | 0.8492 | 248 | 0.0081 | 0.3418 | 0.2981 | 254 | 0.0077 |
HRV-B | 5.2793 | 1802 | 2.6419 | 0.8706 | 238 | 0.0043 | 0.3774 | 0.3262 | 239 | 0.0042 |
HRV-C | 5.3165 | 1736 | 2.5766 | 0.8688 | 243 | 0.0033 | 0.3890 | 0.3353 | 243 | 0.0033 |
Marburg | 5.3418 | 4779 | 2.5061 | 0.8225 | 252 | 0.0020 | 0.4025 | 0.3267 | 253 | 0.0021 |
Measles | 5.4293 | 3974 | 2.3932 | 0.8767 | 256 | 0.0022 | 0.4186 | 0.3655 | 256 | 0.0022 |
MERS | 5.4040 | 7530 | 2.4687 | 0.8665 | 256 | 0.0011 | 0.4020 | 0.3498 | 257 | 0.0013 |
Norovirus | 5.4015 | 1900 | 2.3835 | 0.8461 | 253 | 0.0046 | 0.4244 | 0.3536 | 254 | 0.0045 |
Phage-MS2 | 5.3680 | 893 | 2.3100 | 0.8084 | 249 | 0.0107 | 0.4436 | 0.3496 | 249 | 0.0114 |
Planidovirus | 5.0360 | 10295 | 3.0466 | 0.7017 | 261 | 0.0183 | 0.2449 | 0.1863 | 315 | 0.0161 |
Polio | 5.3837 | 1860 | 2.4300 | 0.8423 | 254 | 0.0044 | 0.4172 | 0.3452 | 254 | 0.0047 |
Rabies | 5.3802 | 2982 | 2.4359 | 0.8425 | 252 | 0.0027 | 0.4148 | 0.3443 | 253 | 0.0028 |
SARS | 5.3825 | 7438 | 2.6599 | 0.9058 | 256 | 0.0020 | 0.3716 | 0.3395 | 257 | 0.0019 |
SARS-CoV-2 | 5.3330 | 7476 | 2.8260 | 0.9014 | 258 | 0.0022 | 0.3546 | 0.3168 | 258 | 0.0021 |
Yellow fever | 5.3430 | 2716 | 2.6168 | 0.8421 | 258 | 0.0050 | 0.3962 | 0.3206 | 257 | 0.0059 |
Zika | 5.3377 | 2699 | 2.2919 | 0.7300 | 257 | 0.0081 | 0.4142 | 0.3181 | 258 | 0.0053 |
Note: Entropies S4 are calculated for the distributions of four-nucleotide chunks using (6)