Table 1. . Algorithm used for real-time data to flag atypical amplification curves for removal in real-time dPCR experiments.
False positive to be removed | Standard (which will be removed) | |
---|---|---|
1 | Fluorescent signal increases but then decreases before completion of thermocycling | FAM20/FAM15 <0.95 or FAM25/FAM20 <0.95 or FAM30/FAM25 <0.95 or FAM35/FAM30 <0.95 |
2 | Fluorescent signal comes up too late | (FAM39-FAM35)/(FAM39-FAM15) >0.3 |
3 | Fluorescent signal starts high in early cycles or remains relatively flat during thermocycling | FAM20 >MEAN(FAM20) + 6*SD(FAM20) or (FAM35-FAM25)/25 <0.1 |
4 | Fluorescent signal shows minimal increase between cycle 25 and cycle 35 | (FAM30-FAM25)/(FAM39-FAM15) <0.33 |
5 | Fluorescent signal shows too much increase between cycle 10 and cycle 15 | 0.92 <FAM15/FAM10 <1.08 |
SD: Standard deviation.