AJ	adherens junction
AJC	apical junction complex
AGAT	arginine:glycine aminotransferase
BMI	body mass index
CLDN1	Claudin 1
CR	Conventionally-raised
CK	creatine kinase
CrT1	creatine transporter 1
CD	Crohn’s disease
DSS	dextran sodium sulfate
ETC	electron transport chain
ER	endoplasmic reticulum
FMT	fecal microbiota transplantation
GI	Gastrointestinal
GMM	genetically modified microorganism
GF	germ-free
GAMT	guanidinoacetate methyltransferase
GAA	guanidinoacetic acid
HDAC	histone deacetylase
HIF	hypoxia-inducible factor
IEC	intestinal epithelial cell
IBD	inflammatory bowel disease
IBS	irritable bowel syndrome
MCT12	monocarboxylate transporter 12
MCT1	monocarboxylate transporter isoform 1
NGP	next-generation probiotic
NSP	non-starch polysaccharide
PRPP	phosphoribosyl pyrophosphate
RS	resistant starch
SAM	S-adenosyl methionine
SCFA	short chain fatty acid
SMCT1	sodium-coupled monocarboxylate transporter 1
TJ	tight junction
TAE	total available energy
UC	ulcerative colitis
UPR	unfolded protein response
XBP1	X-box binding protein 1
ZO	zona occludins