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. 2021 Feb 14;13(1):1887680. doi: 10.1080/20002297.2021.1887680

Table 3.

Seven ASVs that showed significant agreement* with regards to the probabilities of presence or absence (Kappa statistics) between saliva and any pancreatic tissue or intestinal samples

ASV IDb Kappa (SD) q-value Agree obs Prop.pp Prop.pa Prop.ap Prop.aa Genusa Species (HOMD)a
ASV28 0.406 (0.116) 0.004 0.896 0.042 0.104 0.000 0.854 Fusobacterium nucleatum subsp. vincentii
ASV23 0.492 (0.137) 0.004 0.896 0.063 0.083 0.021 0.833 Rothia mucilaginosa (GG)
ASV20 0.431 (0.142) 0.013 0.875 0.063 0.083 0.042 0.813 Saccharibacteria_(TM7)_[G-1] bacterium_HMT_352
ASV27 0.357 (0.111) 0.009 0.875 0.042 0.125 0.000 0.833 Oribacterium parvum
ASV01 0.344 (0.119) 0.016 0.708 0.563 0.271 0.021 0.146 Streptococcus  
ASV47 0.309 (0.104) 0.014 0.917 0.021 0.000 0.083 0.896 Fusobacterium nucleatum subsp. vincentii
ASV17 0.284 (0.101) 0.017 0.729 0.083 0.271 0.000 0.646 Fusobacterium  

Agree obs = observed agreement; ASV = Amplicon Sequence Variants; SD = standard deviation; q-value = p-value adjusted for multiple testing via the false discovery rate method; Prop. pp = probability of an ASV to be present in both oral and any pancreatic tissue or intestinal samples; Prop. pa = probability of an ASV to be present in oral samples but absent in pancreatic or intestinal samples; Prop. ap = probability of an ASV to be absent in oral samples but present in pancreatic or intestinal samples; Prop. aa = probability of an ASV to be absent in both oral and any pancreatic tissue or intestinal samples.

*Significant agreement/concordance can be reached if probability of an ASV to be present in both oral and any pancreatic tissue or intestinal samples (Prop. pp), or probability of an ASV to be absent in both oral and any pancreatic tissue or intestinal sample (Prop. aa) is high.

aTAXONOMIC annotations of the ASVs are from HOMD database unless otherwise noted. GG = green gene database.

bSV ID used in Figure 1 left panel.