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. 2021 Feb 18;20(4):102791. doi: 10.1016/j.autrev.2021.102791

Table 1.

Human proteins that align with SARS-CoV-2 peptide CFLGYFCTCYFGLFC [19] with more than 7 residue matches. They are predicted to contain epitopes with at least 5 residue matches to the respective epitope regions in the query. Alignments are displayed as they are presented in the original file, but matching residues are written bold. Those residues in the predicted epitope parts are still bold if present. Yet they are further underlined if present in both query and subject epitopes. Gaps in the alignments are not shown in the epitopes. Numbers in front of the epitope pairs indicate the HLA allele and the predictor, as specified at the title row. However, only the epitopes predicted by NetMHCcons are displayed when significant predictions that are indicated at both 1 and 2, or 3 and 4, are present.

Alignments, top: query
1
HLA-A*24:02, NetMHCcons
3
HLA-A*02:01, NetMHCcons
Protein name
(Matches in bold) 2 HLA-A*24:02, NetCTLpan 4 HLA-A*01:01, NetCTLpan Sequence ID (only the 1st)
CFLGYFCTCYFGLFC 1 CFLGYFCTCYFGLF hCG1995581, partial
CFSSYF----FLLFC 2 CFSSYFFLLF EAW57092.1
CFLGYFCTCYFGLF 1 CFLGYFCTCYFGLF Immunoglobulin heavy chain junction region
CFVG---SC-FGLF 2 CFVGSCFGLF MON77051.1
CFLGYFCTCYFGLF 1 CFLGYFCTCYFGLF Neuronal acetylcholine receptor subunit alpha-2
CFLG---T--IGLF 2 CFLGTIGLF NP_001334636.1
CFLGYFCTCYFGLF 1 CFLGYFCTCYFGLF 3 FLGYFCTCYFGL arginyl-tRNA synthetase-like, isoform CRA_b, partial
CFL--FI--YFILF 2 CFLFIYFILF FLFIYFILF EAW48585.1
FLGYFCT---CYFGLFC 4 FLGYFCTCY immunoglobulin heavy chain variable region, partial
FIGY-CSSTSCYTGGFC FIGYCSSTSCY CEF94348.1
CFLGYFCTC---YFGLF 1 CFLGYFCTCYFGLF unnamed protein product; E2IG4; tsukushin isoform b precursor
CFPG--CQCEVETFGLF CFPGCQCEVETFGLF BAG52371.1; AAF09483.1; NP_001245139.1
FLGYFCTCYFGLFC 3 FLGYFCTCYFGL G protein-coupled receptor 89C, partial; Golgi pH regulator B; unnamed protein product; Golgi pH regulator A
FLGYF----FSIYC 4 FLGYFFSI CAI17085.1; NP_001337112.1; BAG63613.1; NP_001091082.2
FLG-YFCTCYFGLF 3 FLGYFCTCYFGL unnamed protein product; PAP2D protein, partial; Phospholipid phosphatase- related protein type 5
FLGIY--T--FGLF FLGIYTFGL BAG58540.1; AAH40174.1; XP_011539140.1
FLGYFCTCYFGLF 1 GYFCTCYFGLF Solute carrier family 15 member 5
FLEYFSTC---LF 2 EYFSTCLF NP_001164269.1
CFLGYFCTCYFGL 3 FLGYFCTCYFGL Immunoglobulin heavy chain junction region
CALG---TCYYGL ALGTCYYGL MOL37243.1
FLGYFCTCY-FGLF 3 FLGYFCTCYFGL Phospholipid phosphatase-related protein type 2
FLG----VYSFGLF FLGVYSFGL XP_024307423.1
CFLGYFCTCYFGL 1 CFLGYFCTCYFGLF 3 FLGYFCTCYFGL Immunoglobulin heavy chain junction region
CYLGYW---YFDL 2 CYLGYWYFDL YLGYWYFDL MCC33910.1
CFLGYFCTCYFGL 3 FLGYFCTCYFGL Immunoglobulin heavy chain junction region
CFLHY----YYGL FLHYYYGL MOQ87140.1
FLGYFCTCYFGLF 1 GYFCTCYFGLF Adenosine receptor A2b
FLGY--MVYFNFF 2 GYMVYFNFF EAX04485.1
FLGYFCTCYFGLF 3 FLGYFCTCYFGL [Protein ADP-ribosylarginine] hydrolase-like protein 1
FLGSLCT---ALF FLGSLCTAL NP_954631.1
FLGYFCTCYFGLF 2 GYFCTCYFGLF 3 FLGYFCTCYFGL Transmembrane protein 250
FLLYF-SC--SLF LYFSCSLF FLLYFSCSL NP_001243455.1
FLGYFCTCYFGL 1 GYFCTCYFGLF chromosome 9 open reading frame 46; Plasminogen receptor (KT)
FLKYFGT-FFGL 2 KYFGTFFGL EAW58764.1; XP_005251569.1
FL-GYFCTCYFGL 1 GYFCTCYFGLF 3 FLGYFCTCYFGL Immunoglobulin heavy chain junction region
FLTGYYATPYFDL 2 GYYATPYFDL 4 FLTGYYATPYFDL MOM08080.1
LGYFCT---CYFGLF 1 GYFCTCYFGLF Immunoglobulin heavy chain junction region
LGY-CSSTSCYFGFF 2 GYCSSTSCYFGFF MCG41834.1
GYFCTC---YFGLFC 1 GYFCTCYFGLF Slit homolog 2 protein
GYTCICPEGYSGLFC GYTCICPEGYSGLF XP_011512212.2
FLGYFCTCYFGL 3 FLGYFCTCYFGL Immunoglobulin heavy chain junction region
FLGY----YYGL FLGYYYGL MOP50498.1
CFLGYFCTCYF 2 CFLGYFCTCYF 4 FLGYFCTCY unnamed protein product; Solute carrier family 35 member B1
CFLGVF-VCYF CFLGVFVCYF FLGVFVCY BAG58831.1; XP_011522481.1
LGYFCTCYFGL 2 GYFCTCYFGL Chain A, Metabotropic glutamate receptor 5, Lysozyme and Endolysin
LGYLCT--FXL GYLCTFXL 4OO9_A and 6FFH_A
LGYFCTCYFGL 4 FLGYFCTCY Immunoglobulin gamma 2 heavy chain variable region, partial
LGTF-TYYYGL LGTFTYYY ADM43945.1
GYFCTCYFGLF 1 GYFCTCYFGLF hypothetical protein; Protein crumbs homolog 1
GYSCLC-FGNF 2 GYSCLCFGNF CAE45845.1; XP_011507671.1
GYFCTCYFGL 2 GYFCTCYFGL Immunoglobulin heavy chain junction region
GYFY--YFGL GYFYYFGL MOL71978.1
GYFCTCYFGL 2 GYFCTCYFGL Immunoglobulin heavy chain junction region
GYFTTGYFDL GYFTTGYFDL MOM22920.1
GYFCTCYF 1 GYFCTCYFGLF hCG2028737
GYFCTNYF 2 GYFCTNYF EAW73174.1