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. 2021 Apr 15;184(8):2201–2211.e7. doi: 10.1016/j.cell.2021.02.033
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Fab Dejnirattisai et al., 2021 N/A
IgG Dejnirattisai et al., 2021 N/A
Human anti-NP (mAb 206) Dejnirattisai et al., 2021 N/A
Regeneron mAbs AstraZeneca Cat#REGN10933, REGN10987
AstraZeneca mAbs AstraZeneca Cat#AZD1061, AZD8895
Anti-Human IgG (Fc specific)-Peroxidase Sigma Cat#A0170; RRID:AB_257868

Bacterial and virus strains

SARS-CoV-2 (Australia/VIC01/2020) Caly et al., 2020 N/A
SARS-CoV-2/B.1.1.7 Public Health England N/A
DH5α bacteria In Vitrogen Cat#18263012

Biological samples

Serum from Pfizer-vaccinated individuals University of Oxford N/A
Serum from AstraZeneca-Oxford-vaccinated individuals University of Oxford N/A
Plasma from SARS-CoV-2 patients John Radcliffe Hospital in Oxford UK N/A

Chemicals, peptides, and recombinant proteins

His-tagged SARS-CoV-2 RBD This paper N/A
His-tagged SARS-CoV-2 RBD N501Y This paper N/A
His-tagged human ACE2 This paper N/A
Human ACE2-hIgG1Fc This paper N/A
Phosphate buffered saline tablets Sigma-Aldrich Cat#P4417
Dulbecco’s Modified Eagle Medium, high glucose Sigma-Aldrich Cat#D5796
Dulbecco’s Modified Eagle Medium, low glucose Sigma-Aldrich Cat#D6046
FreeStyle 293 Expression Medium GIBCO Cat#12338018
L-Glutamine–Penicillin–Streptomycin solution Sigma-Aldrich Cat#G1146
Fetal Bovine Serum GIBCO Cat#12676029
Polyethylenimine, branched Sigma-Aldrich Cat#408727
Carboxymethyl cellulose Sigma Cat#C4888
Strep-Tactin®XT IBA Lifesciences Cat#2-1206-025
HEPES Melford Cat#34587-39108
Sodium Chloride Honeywell Cat#SZBF3340H
LB broth Fisher Scientific UK Cat#51577-51656
Mem Neaa (100X) GIBCO Cat#2203945
Trypsin-EDTA GIBCO Cat#2259288
L-Glutamine 200 mM (100X) GIBCO Cat#2036885
SYPROorange (5000X in DMSO) Thermo Cat#S6651
Isopropyl β-d-1-thiogalactopyranoside Meridian Bioscience Cat#BIO-37036
Kanamycin Melford Cat#K22000
Lysozyme Sigma-Aldrich Cat#L6876
Tris-base Melford Cat#T60040
Imidazole Sigma-Aldrich Cat#56750
Triton X-100 Sigma-Aldrich Cat#8787
Turbonuclease Sigma-Aldrich Cat#T4330
RNase A QIAGEN Cat#158922
NaCl Sigma-Aldrich Cat#S9888
MgSO4 Sigma-Aldrich Cat#746452
Na2HPO4 Melford Cat#S23100
NaH2PO4 Melford Cat#S23185

Deposited data

The coordinates and structure factors of the SARS-CoV-2 RBD-N501/Fab269 and SARS-CoV-2 RBD-501Y/Fab269 crystallographic complexes This paper PDB: 7NEH, 7NEG

Experimental models: cell lines

HEK293S GnTI- cells ATCC Cat#CRL-3022; RRID:CVCL_A785
HEK293 cells ATCC Cat#CRL-3216
Expi293F Cells GIBCO, Cat#A14527; RRID:CVCL_0063
Hamster: ExpiCHO cells Thermo Fisher Cat#A29133
Vero cells ATCC Cat#CCL-81; RRID:CVCL_0059

Recombinant DNA

Vector: pHLsec Aricescu et al., 2006 N/A
Vector: pNEO Aricescu et al., 2006 N/A
Vector: pOPING-ET Nettleship et al., 2008 N/A
human ACE2 cDNA Sourcebiosciences Cat#5297380
Vector: human IgG1 heavy chain German Cancer Research Center, Heidelberg, Germany (H. Wardemann) N/A
Vector: human lambda light chain German Cancer Research Center, Heidelberg, Germany (H. Wardemann) N/A
Vector: human kappa light chain German Cancer Research Center, Heidelberg, Germany (H. Wardemann) N/A
Vector: Human Fab Univeristy of Oxford N/A
Vector: Human scFv University of Oxford, NDM (G. Screaton) N/A

Software and algorithms

Xia2-dials Winter et al., 2018 https://xia2.github.io/parameters.html
PHENIX Liebschner et al., 2019 https://www.phenix-online.org/
COOT Emsley and Cowtan, 2004 https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
PyMOL Warren DeLano and Sarina Bromberg https://pymol.org/2/
Data Acquisition Software 11.1.0.11 Fortebio https://www.sartorius.com/en/products/protein-analysis/octet-systems-software
Data Analysis Software HT 11.1.0.25 Fortebio https://www.sartorius.com/en/products/protein-analysis/octet-systems-software
Prism 8.0 GraphPad https://www.graphpad.com/scientific-software/prism/
IBM SPSS Software 26 IBM https://www.ibm.com/us-en/?ar=1
mabscape This paper https://github.com/helenginn/mabscape
https://snapcraft.io/mabscape

Other

X-ray data were collected at beamline I03, Diamond Light Source, under proposal mx19946 for COVID-19 rapid access This paper https://www.diamond.ac.uk/covid-19/for-scientists/rapid-access.html
TALON Superflow Metal Affinity Resin Clontech Cat#635668
HiLoad 16/600 Superdex 200 pg Cytiva Cat#28-9893-35
Superdex 200 increase 10/300 GL column Cytiva Cat#28990944
HisTrap HP 5-ml column Cytiva Cat#17524802
HiTrap Heparin HT 5-ml column Cytiva Cat#17040703
Amine Reactive Second-Generation (AR2G) Biosensors Fortebio Cat#18-5092
Octet RED96e Fortebio https://www.sartorius.com/en/products/protein-analysis/octet-label-free-detection-systems
Buffer exchange system “QuixStand” GE Healthcare Cat#56-4107-78
Sonics vibra-cell vcx500 sonicator VWR Cat#432-0137
Cartesian dispensing system Genomic solutions Cat#MIC4000
Hydra-96 Robbins Scientific Cat#Hydra-96
96-well crystallization plate Greiner bio-one Cat#E20113NN
Crystallization Imaging System Formulatrix Cat#RI-1000