TABLE 2.

Weaning differential methylation and expression of T cell co-receptor genes.

Gene	DMR location	Gene feature	Methylation difference (post vs. pre)			Log2 fold change (post vs. pre-weaning)
			All	LS	HS	All	LS	HS
CD3E	9:45620001-45621000	Promoter	−9.13	−13.17	−6.02	0.076	0.064	0.024
	9:45621001-45622000	Promoter	−16.43*	−19.64	−17.50
	9:45624001-45625000	Gene body	−6.63	−13.63	2.98
CD3D	9:45645001-45646000	Promoter	−5.08	−18.71	2.95	0.273	0.165	0.081
CD3G						−0.460	−0.528	−0.588
CD4	5:63916001-63917000	Promoter	−5.39	−17.70	6.06	−0.122	−0.143	−0.387
CD8A	–	–	–	–	–	−0.311	−0.079	−0.59
CD8B	3:57970001-57971000	Promoter	16.50	15.17	17.49	−0.80	−0.251	−1.67
	3:57988001-57989000	Gene body	11.93	−0.81	20.57

Boldface indicates significant differential methylation/expression.