Table 4.
Percentage of synonymous (syn) and non-synonymous (non-syn) mutation in three different codon positions (CP)-1st/2nd/3rd in each of the SARS-CoV-2 protein.
| Protein | CP | Type | Percentage |
|---|---|---|---|
| E | 1st | Non-syn | 100.00 |
| M | 1st | Non-syn | 26.67 |
| M | 1st | Syn | 6.67 |
| N | 1st | Non-syn | 33.96 |
| N | 1st | Syn | 1.89 |
| ORF10 | 1st | Non-syn | 50.00 |
| ORF1ab | 1st | Non-syn | 22.80 |
| ORF1ab | 1st | Syn | 2.74 |
| ORF3a | 1st | Non-syn | 33.33 |
| ORF7a | 1st | Non-syn | 40.00 |
| ORF7b | 1st | Non-syn | 50.00 |
| ORF8 | 1st | Non-syn | 30.00 |
| S | 1st | Non-syn | 20.48 |
| S | 1st | Syn | 1.20 |
| M | 2nd | Non-syn | 20.00 |
| N | 2nd | Non-syn | 26.42 |
| ORF1ab | 2nd | Non-syn | 26.44 |
| ORF3a | 2nd | Non-syn | 30.30 |
| ORF7a | 2nd | Non-syn | 20.00 |
| ORF7b | 2nd | Non-syn | 50.00 |
| ORF8 | 2nd | Non-syn | 60.00 |
| S | 2nd | Non-syn | 28.92 |
| M | 3rd | Syn | 46.67 |
| N | 3rd | Non-syn | 9.43 |
| N | 3rd | Syn | 28.30 |
| ORF10 | 3rd | Syn | 50.00 |
| ORF1ab | 3rd | Non-syn | 8.51 |
| ORF1ab | 3rd | Syn | 39.51 |
| ORF3a | 3rd | Non-syn | 9.09 |
| ORF3a | 3rd | Syn | 27.27 |
| ORF6 | 3rd | Non-syn | 50.00 |
| ORF6 | 3rd | Syn | 50.00 |
| ORF7a | 3rd | Syn | 40.00 |
| ORF8 | 3rd | Syn | 10.00 |
| S | 3rd | Non-syn | 15.66 |
| S | 3rd | Syn | 33.73 |