Table 3.
Significant SNPs associated with seven wool traits
| Trait | Chr | position (bp) | P-value | Candidate genes | Distance (bp) |
|---|---|---|---|---|---|
| FD | 2 | 127,805,728 | 2.80E-08 | UBE2E3 | within |
| 14 | 42,678,119 | 1.52E-08 | RHPN2 | 4985 | |
| FDCV | 3 | 74,006,775 | 3.19E-08 | NRXN1 | within |
| 11 | 6,520,617 | 5.25E-08 | ANKFN1 | within | |
| FDSD | 12 | 38,844,498 | 6.60E-08 | TNFSF4 | −38,182 |
| 19 | 53,142,776 | 2.31E-08 | LOC101117971 | within | |
| 19 | 53,142,801 | 3.23E-08 | LOC101117971 | within | |
| SL | 1 | 211,531,257 | 2.35E-08 | NLGN1 | within |
| 1 | 205,410,405 | 3.64E-08 | USP13 | within | |
| 4 | 50,182,043 | 8.08E-09 | LOC101108907 | 18,447 | |
| 9 | 82,560,062 | 1.09E-09 | GEM | 760 | |
| 9 | 82,565,963 | 3.11E-08 | GEM | 6661 | |
| 9 | 82,560,051 | 3.28E-08 | GEM | 749 | |
| 9 | 82,565,750 | 4.22E-08 | GEM | 6448 | |
| 17 | 68,092,867 | 1.02E-08 | EWSR1 | within | |
| 17 | 68,313,142 | 1.37E-08 | NF2 | within | |
| 24 | 29,022,455 | 2.74E-08 | CALN1 | 16,070 | |
| GFW | 2 | 89,156,912 | 7.96E-09 | LOC101103702 | within |
| 2 | 20,077,571 | 9.50E-09 | – | ||
| 2 | 20,343,753 | 1.64E-08 | – | ||
| 2 | 22,673,981 | 7.32E-08 | LOC101123603 | −32,038 | |
| 3 | 9,591,330 | 1.63E-11 | MVB12B | within | |
| 3 | 9,591,125 | 3.41E-08 | MVB12B | within | |
| 3 | 84,111,139 | 6.05E-08 | – | ||
| 11 | 48,617,494 | 6.61E-08 | PITPNC1 | within | |
| 24 | 30,292,869 | 4.70E-08 | LOC105604756 | within | |
| 25 | 37,386,229 | 1.56E-08 | NRG3 | within | |
| CWR | 1 | 78,731,004 | 4.92E-08 | LOC101117031 | within |
| 8 | 50,472,213 | 5.28E-08 | – | ||
| 10 | 32,755,294 | 1.44E-08 | – | ||
| SS | 1 | 96,961,763 | 7.87E-12 | LOC101112943 | within |
| 1 | 84,208,941 | 4.05E-09 | VAV3 | within | |
| 2 | 182,741,643 | 1.01E-08 | LOC105610635 | within | |
| 2 | 180,636,507 | 1.11E-08 | – | ||
| 3 | 108,977,664 | 1.55E-08 | – | ||
| 3 | 108,977,663 | 2.31E-08 | – | ||
| 3 | 108,977,665 | 2.79E-08 | – | ||
| 7 | 57,497,429 | 4.6E-08 | LOC105607291 | within | |
| 7 | 57,544,088 | 6.95E-08 | LOC105607291 | within | |
| 12 | 65,659,038 | 5.67E-10 | – | ||
| 12 | 65,676,686 | 8.32E-10 | – | ||
| 12 | 65,676,784 | 2.76E-09 | – | ||
| 12 | 65,666,086 | 3.99E-09 | – | ||
| 12 | 65,665,315 | 7.77E-08 | – | ||
| 13 | 65,826,724 | 5.95E-08 | SRC | 28,588 | |
| 15 | 21,954,509 | 6.51E-10 | BCO2 | within | |
| 15 | 51,815,926 | 3.38E-08 | PGM2L1 | within | |
| 15 | 51,845,450 | 3.71E-08 | PGM2L1 | within | |
| 15 | 21,953,940 | 5.87E-08 | BCO2 | within | |
| 15 | 21,955,321 | 6.14E-08 | BCO2 | within | |
| 15 | 51,810,577 | 6.29E-08 | PGM2L1 | within | |
| 18 | 59,961,387 | 1.41E-08 | PAPOLA | − 6293 | |
| 18 | 36,751,894 | 4.77E-08 | – | 82,558 | |
| 18 | 36,747,715 | 7.16E-08 | – | ||
| 18 | 36,789,189 | 7.83E-08 | – | ||
| 22 | 37,530,124 | 1.16E-08 | FAM204A | 12,749 | |
| 22 | 21,182,419 | 6.28E-08 | LOC105604253 | 15,932 |
FD mean fibre diameter, FDCV fibre diameter coefficient of variation, FDSD fibre diameter standard deviation, SL staple length, GFW greasy fleece weight, CWR clean wool rate, SS staple strength