Fig. 2.

Dataset generated by flsnRNA-seq is consistent with protoplast-based scRNA-seq. a Heatmap represents alignment score between the single-nucleus data and single-cell datasets generated from 10x Genomics platform. Alignment score is calculated by Scanorama [30]. Higher alignment score indicates higher similarity between a pair of datasets. b Pairwise integration of two single cell/nucleus datasets. The batch effect is removed by Scanorama. The expression matrix is downsampled to the same dimension as the single-nucleus data