Table 3. Membrane-binding potential and cellular localization of CPPs.
| Epitope | Protein-binding Potential (Boman index) | Hydrophobic moment (μH) | Membrane-binding potential (D factor) | Cellular localization by TMHMM Server | Total probability of N-in by TMHMM Server |
|---|---|---|---|---|---|
| S protein | |||||
| NLTTRTQLPP | 2.49 | 0.148 | 0.469 | Inside | 0.47745 |
| RFQTLLALHR | 2.3 | 0.342 | 1.147 | Inside | 0.48730 |
| YLQPRTFLLK | 1.09 | 0.225 | 0.8724 | Outside | 0.34806 |
| SVYAWNRKRI | 3.24 | 0.224 | 1.196 | Inside | 0.89106 |
| YAWNRKRISN | 4.31 | 0.162 | 1.142 | Inside | 0.91633 |
| AWNRKRISNC | 4.17 | 0.259 | 1.234 | Inside | 0.92814 |
| WNRKRISNCV | 3.95 | 0.300 | 1.273 | Inside | 0.91952 |
| RQIAPGQTGK | 2.55 | 0.081 | 0.736 | Inside | 0.71347 |
| YNYLYRLFRK | 2.96 | 0.690 | 1.641 | Inside | 0.74845 |
| YLYRLFRKSN | 3.28 | 0.567 | 1.525 | Inside | 0.69159 |
| YRLFRKSNLK | 3.82 | 0.275 | 1.5796 | Inside | 0.75816 |
| RLFRKSNLKP | 3.81 | 0.322 | 1.623 | Inside | 0.61242 |
| RKSNLKPFER | 4.98 | 0.368 | 1.337 | Inside | 0.70344 |
| KKSTNLVKNK | 3.24 | 0.355 | 1.655 | Inside | 0.87353 |
| KSTNLVKNKC | 2.56 | 0.377 | 1.345 | Inside | 0.85159 |
| HADQLTPTWR | 2.99 | 0.468 | 0.606 | Inside | 0.56152 |
| YQTQTNSPRR | 5.62 | 0.323 | 0.964 | Inside | 0.89727 |
| TQTNSPRRAR | 6.36 | 0.219 | 1.196 | Inside | 0.92515 |
| TNSPRRARSV | 5.49 | 0.292 | 1.265 | Inside | 0.85479 |
| NSPRRARSVA | 5.05 | 0.329 | 1.300 | Inside | 0.82719 |
| PRRARSVASQ | 4.94 | 0.302 | 1.275 | Inside | 0.83300 |
| KQIYKTPPIK | 1.5 | 0.194 | 1.173 | Inside | 0.77001 |
| SQILPDPSKP | 1.67 | 0.404 | 0.381 | Outside | 0.15396 |
| RLITGRLQSL | 2.07 | 0.502 | 0.897 | Inside | 0.47579 |
| M protein | |||||
| NRNRFLYIIK | 3.1 | 0.346 | 1.316 | Inside | 0.81684 |
| RNRFLYIIKL | 1.95 | 0.326 | 1.297 | Inside | 0.66588 |
| YIIKLIFLWL | -2.91 | 0.488 | 0.790 | Outside | 0.20334 |
| KLIFLWLLWP | -2.66 | 0.304 | 0.616 | Outside | 0.07090 |
| FIASFRLFAR | 1.08 | 0.522 | 1.152 | Outside | 0.32626 |
| ASFRLFARTR | 3.62 | 0.343 | 1.313 | Inside | 0.67733 |
| SFRLFARTRS | 4.14 | 0.366 | 1.335 | Inside | 0.64273 |
| FRLFARTRSM | 3.56 | 0.350 | 1.320 | Inside | 0.67490 |
| RLFARTRSMW | 3.63 | 0.589 | 1.546 | Inside | 0.78030 |
| FARTRSMWSF | 2.67 | 0.277 | 0.921 | Inside | 0.62650 |
| HGTILTRPLL | 0.41 | 0.254 | 0.569 | Outside | 0.24888 |
| GAVILRGHLR | 1.2 | 0.323 | 0.964 | Outside | 0.42609 |
| RIAGHHLGRC | 2.43 | 0.423 | 1.059 | Inside | 0.64698 |
| YSRYRIGNYK | 3.99 | 0.141 | 1.123 | Inside | 0.89352 |
| N protein | |||||
| PQNQRNAPRI | 4.74 | 0.243 | 0.889 | Inside | 0.80935 |
| ERSGARSKQR | 6.67 | 0.143 | 1.124 | Inside | 0.89938 |
| RSGARSKQRR | 7.48 | 0.114 | 1.757 | Inside | 0.94959 |
| SGARSKQRRP | 5.99 | 0.188 | 1.497 | Inside | 0.85655 |
| GARSKQRRPQ | 6.2 | 0.185 | 1.494 | Inside | 0.89829 |
| ARSKQRRPQG | 6.2 | 0.185 | 1.494 | Inside | 0.89829 |
| RSKQRRPQGL | 5.89 | 0.280 | 1.584 | Inside | 0.83224 |
| SKQRRPQGLP | 4.4 | 0.245 | 1.221 | Inside | 0.60745 |
| KQRRPQGLPN | 4.72 | 0.292 | 1.265 | Inside | 0.69009 |
| RRPQGLPNNT | 4.53 | 0.432 | 1.067 | Inside | 0.62344 |
| QIGYYRRATR | 4.54 | 0.383 | 1.351 | Inside | 0.93350 |
| IGYYRRATRR | 5.48 | 0.445 | 1.740 | Inside | 0.95251 |
| GYYRRATRRI | 5.48 | 0.564 | 1.852 | Inside | 0.95251 |
| YYRRATRRIR | 7.07 | 0.593 | 2.209 | Inside | 0.98065 |
| YRRATRRIRG | 6.96 | 0.565 | 2.183 | Inside | 0.96774 |
| RRATRRIRGG | 6.85 | 0.478 | 2.101 | Inside | 0.94656 |
| RATRRIRGGD | 6.23 | 0.365 | 1.334 | Inside | 0.90958 |
| TRRIRGGDGK | 5.38 | 0.314 | 1.286 | Inside | 0.85699 |
| RIRGGDGKMK | 3.95 | 0.321 | 1.293 | Inside | 0.80713 |
| GKMKDLSPRW | 2.76 | 0.523 | 1.153 | Inside | 0.53414 |
| SQASSRSSSR | 5.39 | 0.171 | 0.821 | Inside | 0.70911 |
| ASSRSSSRSR | 6.33 | 0.114 | 1.097 | Inside | 0.79316 |
| SSRSSSRSRN | 7.18 | 0.180 | 1.159 | Inside | 0.81855 |
| SRSSSRSRNS | 7.18 | 0.183 | 1.162 | Inside | 0.81855 |
| RSSSRSRNSS | 7.18 | 0.179 | 1.158 | Inside | 0.81855 |
| SSSRSRNSSR | 7.18 | 0.165 | 1.145 | Inside | 0.81855 |
| SSRSRNSSRN | 7.5 | 0.192 | 1.171 | Inside | 0.86592 |
| RSRNSSRNST | 7.42 | 0.194 | 1.173 | Inside | 0.90573 |
| GSSRGTSPAR | 3.89 | 0.156 | 0.807 | Inside | 0.52191 |
| AALALLLLDR | -0.63 | 0.125 | 0.118 | Outside | 0.15140 |
| ALALLLLDRL | -0.95 | 0.288 | 0.271 | Outside | 0.09169 |
| KKSAAEASKK | 3.03 | 0.277 | 1.251 | Inside | 0.85101 |
| KSAAEASKKP | 2.48 | 0.385 | 1.023 | Inside | 0.66436 |
| SAAEASKKPR | 3.42 | 0.284 | 0.928 | Inside | 0.71820 |
| AAEASKKPRQ | 3.63 | 0.306 | 0.948 | Inside | 0.79675 |
| AEASKKPRQK | 4.36 | 0.248 | 1.224 | Inside | 0.86032 |
| EASKKPRQKR | 6.04 | 0.165 | 1.475 | Inside | 0.92101 |
| ASKKPRQKRT | 5.61 | 0.096 | 1.740 | Inside | 0.94440 |
| SKKPRQKRTA | 5.61 | 0.060 | 1.706 | Inside | 0.94440 |
| KKPRQKRTAT | 5.53 | 0.087 | 1.732 | Inside | 0.96166 |
| KPRQKRTATK | 5.53 | 0.094 | 1.738 | Inside | 0.96166 |
| PRQKRTATKA | 4.79 | 0.202 | 1.510 | Inside | 0.94133 |
| RQKRTATKAY | 4.81 | 0.311 | 1.423 | Inside | 0.96930 |
| RQGTDYKHWP | 3.88 | 0.330 | 0.641 | Inside | 0.65834 |
| FPPTEPKKDK | 3.17 | 0.088 | 0.413 | Outside | 0.35377 |
| PPTEPKKDKK | 4.02 | 0.225 | 0.872 | Inside | 0.58321 |
| PTEPKKDKKK | 4.58 | 0.236 | 1.212 | Inside | 0.80442 |
| TEPKKDKKKK | 5.13 | 0.110 | 1.527 | Inside | 0.92302 |
| EPKKDKKKKA | 4.7 | 0.147 | 1.458 | Inside | 0.90887 |
| PKKDKKKKAD | 4.89 | 0.184 | 1.493 | Inside | 0.90457 |
| KKDKKKKADE | 5.57 | 0.133 | 1.115 | Inside | 0.93664 |
| TQALPQRQKK | 3.84 | 0.308 | 0.950 | Inside | 0.86179 |
| ALPQRQKKQQ | 4.14 | 0.243 | 1.219 | Inside | 0.86346 |
| ORF3a | |||||
| SASKIITLKK | 0.94 | 0.243 | 1.219 | Inside | 0.75288 |
| ASKIITLKKR | 2.09 | 0.314 | 1.452 | Inside | 0.86807 |
| SKIITLKKRW | 2.04 | 0.492 | 1.784 | Inside | 0.86095 |
| KIITLKKRWQ | 2.25 | 0.485 | 1.777 | Inside | 0.90139 |
| IITLKKRWQL | 1.21 | 0.320 | 1.292 | Inside | 0.76749 |
| KKRWQLALSK | 2.65 | 0.335 | 1.636 | Inside | 0.79484 |
| KRWQLALSKG | 2 | 0.407 | 1.704 | Inside | 0.62646 |
| VRIIMRLWLC | 0.01 | 0.429 | 1.064 | Inside | 0.63104 |
| RIIMRLWLCW | 0.18 | 0.600 | 1.226 | Inside | 0.64902 |
| IIMRLWLCWK | -0.74 | 0.517 | 1.148 | Inside | 0.61977 |
| IMRLWLCWKC | -0.38 | 0.347 | 0.987 | Inside | 0.68839 |
| MRLWLCWKCR | 1.59 | 0.156 | 1.137 | Inside | 0.81046 |
| RLWLCWKCRS | 2.17 | 0.178 | 1.158 | Inside | 0.77912 |
| LWLCWKCRSK | 1.23 | 0.223 | 1.200 | Inside | 0.74360 |
| WLCWKCRSKN | 2.39 | 0.080 | 1.065 | Inside | 0.85315 |
| LCWKCRSKNP | 2.62 | 0.198 | 1.176 | Inside | 0.78747 |
| CWKCRSKNPL | 2.62 | 0.236 | 1.212 | Inside | 0.78747 |
| KCRSKNPLLY | 2.5 | 0.134 | 1.116 | Inside | 0.67216 |
| Orf1ab | |||||
| IKRSDARTAP | 4.15 | 0.217 | 0.864 | Inside | 0.82802 |
| KRSDARTAPH | 5.11 | 0.039 | 0.696 | Inside | 0.81819 |
| PVAYRKVLLR | 1.58 | 0.313 | 1.285 | Inside | 0.60465 |
| VAYRKVLLRK | 2.13 | 0.208 | 1.516 | Inside | 0.80830 |
| AYRKVLLRKN | 3.2 | 0.224 | 1.531 | Inside | 0.85177 |
| YRKVLLRKNG | 3.29 | 0.241 | 1.547 | Inside | 0.79673 |
| RKVLLRKNGN | 3.94 | 0.200 | 1.508 | Inside | 0.80930 |
| KVLLRKNGNK | 3 | 0.234 | 1.540 | Inside | 0.77882 |
| FEIKLAKKFD | 1.45 | 0.412 | 0.718 | Inside | 0.48733 |
| KTIQPRVEKK | 3.75 | 0.289 | 1.262 | Inside | 0.88737 |
| TIQPRVEKKK | 3.75 | 0.161 | 1.141 | Inside | 0.88737 |
| IQPRVEKKKL | 3 | 0.103 | 1.087 | Inside | 0.78283 |
| SGLKTILRKG | 1.53 | 0.531 | 1.491 | Inside | 0.54410 |
| LKTILRKGGR | 2.68 | 0.625 | 1.91 | Inside | 0.71606 |
| KTILRKGGRT | 3.43 | 0.472 | 1.765 | Inside | 0.84956 |
| GNFKVTKGKA | 1.51 | 0.141 | 1.123 | Inside | 0.68622 |
| FKVTKGKAKK | 2.05 | 0.306 | 1.938 | Inside | 0.87336 |
| KVTKGKAKKG | 2.25 | 0.248 | 1.884 | Inside | 0.88617 |
| KGKAKKGAWN | 2.1 | 0.165 | 1.475 | Inside | 0.82016 |
| GGAKLKALNL | -0.25 | 0.094 | 0.748 | Outside | 0.30336 |
| SKGLYRKCVK | 2.39 | 0.571 | 1.859 | Inside | 0.83410 |
| KGLYRKCVKS | 2.39 | 0.574 | 1.861 | Inside | 0.83410 |
| GLYRKCVKSR | 3.32 | 0.456 | 1.750 | Inside | 0.85872 |
| GLLMPLKAPK | -0.87 | 0.305 | 0.947 | Outside | 0.15005 |
| QRKQDDKKIK | 6.07 | 0.223 | 1.2 | Inside | 0.95960 |
| RKQDDKKIKA | 5.33 | 0.227 | 1.204 | Inside | 0.94962 |
| KQDDKKIKAC | 3.71 | 0.420 | 1.056 | Inside | 0.92486 |
| DITFLKKDAP | 1.64 | 0.215 | 0.202 | Inside | 0.41432 |
| MLAKALRKVP | 0.61 | 0.641 | 1.595 | Inside | 0.57064 |
| LAKALRKVPT | 1.1 | 0.661 | 1.613 | Inside | 0.61542 |
| EAKTVLKKCK | 1.95 | 0.508 | 1.469 | Inside | 0.87393 |
| AKTVLKKCKS | 1.61 | 0.525 | 1.815 | Inside | 0.87056 |
| KTVLKKCKSA | 1.61 | 0.517 | 1.808 | Inside | 0.87056 |
| KSAFYILPSI | -0.7 | 0.344 | 0.654 | Outside | 0.26827 |
| KAIVSTIQRK | 2.18 | 0.455 | 1.419 | Inside | 0.89354 |
| STIQRKYKGI | 2.68 | 0.547 | 1.506 | Inside | 0.87849 |
| TIQRKYKGIK | 2.9 | 0.533 | 1.823 | Inside | 0.93039 |
| IQRKYKGIKI | 2.15 | 0.356 | 1.656 | Inside | 0.90786 |
| GARFYFYTSK | 1.8 | 0.190 | 0.839 | Inside | 0.58982 |
| ARYMRSLKVP | 2.58 | 0.412 | 1.378 | Inside | 0.72252 |
| GIEFLKRGDK | 2.68 | 0.472 | 0.775 | Inside | 0.47568 |
| DNLKTLLSLR | 2.21 | 0.363 | 0.672 | Outside | 0.37423 |
| YMSALNHTKK | 1.94 | 0.373 | 1.012 | Inside | 0.74444 |
| SALNHTKKWK | 2.48 | 0.407 | 1.374 | Inside | 0.76830 |
| ALNHTKKWKY | 2.15 | 0.311 | 1.283 | Inside | 0.81149 |
| LNHTKKWKYP | 2.34 | 0.291 | 1.264 | Inside | 0.69869 |
| NHTKKWKYPQ | 3.38 | 0.362 | 1.331 | Inside | 0.82885 |
| HTKKWKYPQV | 2.31 | 0.217 | 1.194 | Inside | 0.78945 |
| KKPASRELKV | 3.1 | 0.317 | 1.289 | Inside | 0.71408 |
| KPASRELKVT | 2.8 | 0.356 | 0.996 | Inside | 0.66033 |
| YTPSFKKGAK | 1.7 | 0.425 | 1.391 | Inside | 0.60188 |
| PSFKKGAKLL | 0.44 | 0.488 | 1.450 | Outside | 0.28608 |
| FKKGAKLLHK | 1.12 | 0.639 | 1.923 | Inside | 0.56438 |
| KKGAKLLHKP | 1.42 | 0.544 | 1.833 | Inside | 0.55042 |
| KGAKLLHKPI | 0.37 | 0.590 | 1.546 | Inside | 0.43639 |
| WCIRCLWSTK | 0.93 | 0.223 | 0.870 | Inside | 0.79516 |
| CIRCLWSTKP | 1.17 | 0.298 | 0.941 | Inside | 0.70751 |
| ANYAKPFLNK | 1.64 | 0.408 | 1.045 | Inside | 0.53508 |
| TNIVTRCLNR | 3.3 | 0.562 | 1.190 | Inside | 0.89302 |
| CTFTRSTNSR | 4.67 | 0.140 | 0.792 | Inside | 0.87592 |
| TCMMCYKRNR | 3.74 | 0.228 | 1.205 | Inside | 0.96377 |
| MCYKRNRATR | 5.42 | 0.232 | 1.539 | Inside | 0.97415 |
| CYKRNRATRV | 5.25 | 0.084 | 1.399 | Inside | 0.97070 |
| YKRNRATRVE | 6.06 | 0.094 | 1.078 | Inside | 0.95678 |
| KRNRATRVEC | 5.92 | 0.077 | 1.062 | Inside | 0.96153 |
| RNRATRVECT | 5.62 | 0.032 | 0.690 | Inside | 0.95230 |
| RDLSLQFKRP | 4.02 | 0.454 | 1.088 | Inside | 0.49113 |
| SLQFKRPINP | 2.32 | 0.319 | 0.961 | Outside | 0.39508 |
| HNIALIWNVK | 0.05 | 0.188 | 0.507 | Inside | 0.60778 |
| LSEQLRKQIR | 4.19 | 0.686 | 1.307 | Inside | 0.75607 |
| QLRKQIRSAA | 3.64 | 0.527 | 1.487 | Inside | 0.86742 |
| LRKQIRSAAK | 3.64 | 0.621 | 1.906 | Inside | 0.89068 |
| RKQIRSAAKK | 4.68 | 0.451 | 2.075 | Inside | 0.95767 |
| KQIRSAAKKN | 3.86 | 0.413 | 1.709 | Inside | 0.93797 |
| QIRSAAKKNN | 3.97 | 0.319 | 1.291 | Inside | 0.92032 |
| AAKKNNLPFK | 1.84 | 0.198 | 1.176 | Inside | 0.63148 |
| KKNNLPFKLT | 1.96 | 0.238 | 1.214 | Inside | 0.54962 |
| NNWLKQLIKV | 0.87 | 0.728 | 1.347 | Inside | 0.65372 |
| LAYYFMRFRR | 3 | 0.469 | 1.432 | Inside | 0.71897 |
| AYYFMRFRRA | 3.31 | 0.303 | 1.276 | Inside | 0.82144 |
| YYFMRFRRAF | 3.19 | 0.478 | 1.441 | Inside | 0.72131 |
| FMRFRRAFGE | 3.75 | 0.600 | 1.226 | Inside | 0.52960 |
| MRFRRAFGEY | 4.06 | 0.504 | 1.135 | Inside | 0.70022 |
| KEMYLKLRSD | 3.29 | 0.265 | 0.580 | Inside | 0.65269 |
| YNRYLALYNK | 2.25 | 0.500 | 1.132 | Inside | 0.74756 |
| RYLALYNKYK | 2.14 | 0.392 | 1.360 | Inside | 0.80198 |
| FRKMAFPSGK | 1.83 | 0.313 | 1.285 | Inside | 0.47019 |
| TANPKTPKYK | 2.67 | 0.009 | 0.998 | Inside | 0.77069 |
| ANPKTPKYKF | 2.12 | 0.169 | 1.149 | Inside | 0.63687 |
| PKTPKYKFVR | 2.72 | 0.292 | 1.595 | Inside | 0.73005 |
| KTPKYKFVRI | 2.23 | 0.323 | 1.624 | Inside | 0.82704 |
| RWFLNRFTTT | 3.09 | 0.360 | 0.999 | Inside | 0.70898 |
| FQSAVKRTIK | 2.37 | 0.618 | 1.573 | Inside | 0.83635 |
| SEVVLKKLKK | 1.44 | 0.508 | 1.469 | Inside | 0.64932 |
| VVLKKLKKSL | 0.27 | 0.612 | 1.897 | Inside | 0.55852 |
| VLKKLKKSLN | 1.34 | 0.757 | 2.034 | Inside | 0.62971 |
| KKLKKSLNVA | 1.65 | 0.534 | 1.824 | Inside | 0.74490 |
| DAAMQRKLEK | 3.62 | 0.368 | 0.677 | Inside | 0.81844 |
| AAMQRKLEKM | 2.51 | 0.518 | 1.148 | Inside | 0.83287 |
| MQRKLEKMAD | 3.56 | 0.646 | 0.939 | Inside | 0.82292 |
| YKQARSEDKR | 6.37 | 0.233 | 0.879 | Inside | 0.92834 |
| KQARSEDKRA | 6.17 | 0.232 | 0.879 | Inside | 0.92248 |
| QARSEDKRAK | 6.17 | 0.186 | 0.835 | Inside | 0.92248 |
| MLFTMLRKLD | 0.93 | 0.562 | 0.860 | Outside | 0.39049 |
| QDLKWARFPK | 2.82 | 0.337 | 0.978 | Inside | 0.59730 |
| DLKWARFPKS | 2.61 | 0.356 | 0.996 | Inside | 0.48806 |
| LKWARFPKSD | 2.61 | 0.331 | 0.972 | Inside | 0.48806 |
| KGFCDLKGKY | 1.44 | 0.467 | 1.1 | Inside | 0.55047 |
| GVSAARLTPC | 0.6 | 0.109 | 0.432 | Inside | 0.44779 |
| GFAKFLKTNC | 0.53 | 0.530 | 1.160 | Inside | 0.51312 |
| KTNCCRFQEK | 4.2 | 0.333 | 0.974 | Inside | 0.92234 |
| PHISRQRLTK | 4.17 | 0.167 | 1.147 | Inside | 0.78638 |
| HISRQRLTKY | 4.18 | 0.190 | 1.169 | Inside | 0.87931 |
| ISRQRLTKYT | 3.97 | 0.208 | 1.186 | Inside | 0.90259 |
| SRQRLTKYTM | 4.23 | 0.231 | 1.208 | Inside | 0.90877 |
| RQRLTKYTMA | 3.71 | 0.210 | 1.188 | Inside | 0.92213 |
| GERVRQALLK | 3.11 | 0.401 | 1.038 | Inside | 0.66110 |
| RVRQALLKTV | 2.37 | 0.490 | 1.452 | Inside | 0.78888 |
| KPYIKWDLLK | 0.84 | 0.143 | 0.794 | Inside | 0.49602 |
| RLKLFDRYFK | 3.4 | 0.622 | 1.577 | Inside | 0.61889 |
| KLFDRYFKYW | 2.18 | 0.889 | 1.499 | Inside | 0.59390 |
| FPFNKWGKAR | 2.16 | 0.338 | 1.309 | Inside | 0.52642 |
| KWGKARLYYD | 2.5 | 0.177 | 0.827 | Inside | 0.72287 |
| YAISAKNRAR | 3.52 | 0.076 | 1.061 | Inside | 0.91112 |
| AISAKNRART | 3.76 | 0.037 | 1.024 | Inside | 0.91919 |
| KNRARTVAGV | 3.19 | 0.315 | 1.287 | Inside | 0.88250 |
| NRQFHQKLLK | 3.55 | 0.436 | 1.401 | Inside | 0.73407 |
| RQFHQKLLKS | 3.23 | 0.495 | 1.457 | Inside | 0.65716 |
| RIMASLVLAR | 0.84 | 0.180 | 0.829 | Inside | 0.57528 |
| RNLQHRLYEC | 4.25 | 0.519 | 0.819 | Inside | 0.77699 |
| RLYECLYRNR | 4.73 | 0.430 | 1.065 | Inside | 0.85428 |
| SLRCGACIRR | 3.3 | 0.356 | 1.326 | Inside | 0.83575 |
| RCGACIRRPF | 3.15 | 0.633 | 1.587 | Inside | 0.77458 |
| CGACIRRPFL | 1.17 | 0.422 | 1.058 | Inside | 0.52389 |
| GACIRRPFLC | 1.17 | 0.269 | 0.913 | Inside | 0.52389 |
| ACIRRPFLCC | 1.13 | 0.416 | 1.052 | Inside | 0.66539 |
| CIRRPFLCCK | 1.87 | 0.493 | 1.455 | Inside | 0.75457 |
| IRRPFLCCKC | 1.87 | 0.298 | 1.271 | Inside | 0.75457 |
| RRPFLCCKCC | 2.23 | 0.347 | 1.317 | Inside | 0.81002 |
| MSYYCKSHKP | 1.92 | 0.271 | 0.915 | Inside | 0.68047 |
| ANTCTERLKL | 2.61 | 0.348 | 0.988 | Inside | 0.76670 |
| SWEVGKPRPP | 2.33 | 0.123 | 0.446 | Outside | 0.22968 |
| VGKPRPPLNR | 3.21 | 0.403 | 1.370 | Inside | 0.41222 |
| GKPRPPLNRN | 4.28 | 0.261 | 1.236 | Inside | 0.48502 |
| KALKYLPIDK | 0.89 | 0.154 | 0.805 | Inside | 0.53339 |
| DKCSRIIPAR | 3.45 | 0.418 | 1.054 | Inside | 0.82505 |
| KCSRIIPARA | 2.4 | 0.376 | 1.344 | Inside | 0.83189 |
| CSRIIPARAR | 3.34 | 0.425 | 1.391 | Inside | 0.84740 |
| SRIIPARARV | 3.06 | 0.289 | 1.262 | Inside | 0.80072 |
| RIIPARARVE | 3.4 | 0.233 | 0.879 | Inside | 0.79867 |
| SVVNARLRAK | 2.88 | 0.144 | 1.125 | Inside | 0.81132 |
| VVNARLRAKH | 3.00 | 0.138 | 1.120 | Inside | 0.83250 |
| VNARLRAKHY | 3.42 | 0.100 | 1.084 | Inside | 0.86059 |
| NARLRAKHYV | 3.42 | 0.057 | 1.043 | Inside | 0.86059 |
| PAPRTLLTKG | 1.3 | 0.242 | 0.888 | Outside | 0.35023 |
| APRTLLTKGT | 1.55 | 0.313 | 0.955 | Inside | 0.54170 |
| FNSVCRLMKT | 1.75 | 0.603 | 1.229 | Inside | 0.71012 |
| FLGTCRRCPA | 1.92 | 0.606 | 1.232 | Inside | 0.60210 |
| DNKLKAHKDK | 4.42 | 0.269 | 0.913 | Inside | 0.80851 |
| KLKAHKDKSA | 3.04 | 0.217 | 1.194 | Inside | 0.79044 |
| FLTRNPAWRK | 3.25 | 0.256 | 1.231 | Inside | 0.70721 |
| RNPAWRKAVF | 2.9 | 0.167 | 1.147 | Inside | 0.75095 |
| GIPKDMTYRR | 3.86 | 0.181 | 0.830 | Inside | 0.81853 |
| DMTYRRLISM | 3.01 | 0.334 | 0.645 | Inside | 0.78592 |
| GNPKAIKCVP | 0.47 | 0.301 | 0.944 | Inside | 0.53539 |
| WNTFTRLQSL | 2.04 | 0.432 | 0.737 | Inside | 0.51104 |
| ELWAKRNIKP | 2.54 | 0.248 | 0.894 | Inside | 0.69594 |
| LWAKRNIKPV | 1.46 | 0.307 | 1.279 | Inside | 0.70434 |
| WAKRNIKPVP | 1.95 | 0.435 | 1.4 | Inside | 0.69474 |
| RNIKPVPEVK | 2.64 | 0.365 | 1.004 | Inside | 0.65866 |
| LLIGLAKRFK | 0.06 | 0.556 | 1.514 | Outside | 0.34306 |
| GLAKRFKESP | 2.55 | 0.567 | 1.195 | Inside | 0.41824 |
| KMQRMLLEKC | 2.25 | 0.534 | 1.164 | Inside | 0.77714 |
| VLRQWLPTGT | 0.84 | 0.442 | 0.747 | Inside | 0.37448 |
| DMSKFPLKLR | 2.29 | 0.438 | 1.073 | Outside | 0.39910 |
| MSKFPLKLRG | 1.33 | 0.425 | 1.391 | Outside | 0.33087 |
| SKFPLKLRGT | 1.82 | 0.312 | 1.284 | Outside | 0.37440 |
| KFPLKLRGTA | 1.3 | 0.337 | 1.308 | Outside | 0.41667 |
| MILSLLSKGR | 0.43 | 0.383 | 1.021 | Outside | 0.30296 |
| LLSKGRLIIR | 1.32 | 0.419 | 1.385 | Outside | 0.44682 |
| GRLIIRENNR | 4.91 | 0.336 | 0.977 | Inside | 0.81939 |
| RLIIRENNRV | 4.6 | 0.443 | 1.078 | Inside | 0.85576 |
| ORF6 | |||||
| LIIKNLSKSL | 0 | 0.601 | 1.227 | Outside | 0.38147 |
| ORF7a | |||||
| HVYQLRARSV | 2.87 | 0.205 | 0.853 | Inside | 0.75260 |
| QLRARSVSPK | 3.69 | 0.081 | 1.066 | Inside | 0.70446 |
| RARSVSPKLF | 2.84 | 0.344 | 1.314 | Inside | 0.52495 |
| RSVSPKLFIR | 2.53 | 0.158 | 1.139 | Inside | 0.51018 |
| ITLCFTLKRK | 1.21 | 0.272 | 1.246 | Inside | 0.72907 |
| TLCFTLKRKT | 1.96 | 0.280 | 1.254 | Inside | 0.78296 |
| LCFTLKRKTE | 2.38 | 0.341 | 0.981 | Inside | 0.71141 |
| ORF8 | |||||
| SKWYIRVGAR | 2.48 | 0.303 | 1.276 | Inside | 0.82389 |
| KWYIRVGARK | 2.7 | 0.208 | 1.516 | Inside | 0.89799 |
| YIRVGARKSA | 2.54 | 0.273 | 1.247 | Inside | 0.83725 |