Table 2.
Three-dimensional structures of disaccharide phosphorylases.
Family | Fold | Clan | EC No. | Enzyme | Organism | PDB code | Ligand | Ref. |
---|---|---|---|---|---|---|---|---|
GT4 | GT-B | 2.4.1.231 | α,α-Trehalose phosphorylase | |||||
GH13 | (β/α)8 | GH-H | 2.4.1.7 | Sucrose phosphorylase | Bifidobacterium adolescentis | 5M9X, 5MAN, 2GDV | Glycosylated resveratrol, sucrose, nigerose | [36] |
2.4.1.352 | Glucosylglycerate phosphorylase | |||||||
2.4.1.359 | 1,2-α-glucosylglycerol phosphorylase | |||||||
GH65 | (α/α)6 | GH-L | 2.4.1.64 | α,α-trehalose phosphorylase | ||||
2.4.1.216 | Trehalose 6-phosphate phosphorylase | |||||||
2.4.1.230 | Kojibiose phosphorylase | Caldicellulosiruptor saccharolyticus | 3WIQ, 3WIR | Kojibiose, Glc | [37] | |||
2.4.1.279 | Nigerose phosphorylase | |||||||
2.4.1.8 | Maltose phosphorylase | Lactobacillus brevis | 1H54 | [38] | ||||
2.4.1.332 | Glucosylglycerol phosphorylase | Bacillus selenitireducens | 4KTP, 4KTR | Glc, isofagomine and glycerol | [39] | |||
2.4.1.282 | 3-O-α-d-glucosyl-l-rhamnose phosphorylase | |||||||
GH94 | (α/α)6 | GH-L | 2.4.1.31 | Laminaribiose phosphorylase | Paenibacillus sp. | 6GH2, 6GH3,6GGY | G1P, Man1P, sulfate | [40] |
2.4.1.20 | Cellobiose phosphorylase | Cellulomonas uda | 3S4A, 3S4B, 3RSY | Cellobiose, Glc, sulfate and glycerol | [35,41,42] | |||
Clostridium thermocellum | 3QDE | Phosphate | ||||||
Cellvibrio gilvus | 3QFY, 2CQS, 3QFZ, 2CQT, 3QG0 | Sulfate, phosphate, isofagomine, 1-deoxynojirimycin | ||||||
2.4.1.280 | N,N′-diacetylchitobiose phosphorylase | Vibrio proteolyticus | 1V7W | GlcNAc | [43] | |||
2.4.1.321 | Cellobionic acid phosphorylase | Saccharophagus degradans | 4ZLF | Cellobionic acid | [44] | |||
GH112 | (β/α)8 | GH-A | 2.4.1.211 | 1,3-β-Galactosyl-N-acetylhexosamine phosphorylase | Bifidobacterium longum | 2ZUT | GalNAc | [45,46] |
2.4.1.247 | β-d-galactosyl-(1 → 4)-l-rhamnose phosphorylase | |||||||
GH130 | 5-Blade β-propeller | 2.4.1.281 | 4-O-β-d-mannosyl-d-glucose phosphorylase | Bacteroides fragilis | 3WAS | Man-Glc + PO4 | [47,48] | |
Ruminococcus albus | 5AYC | Man-Glc + SO4 | ||||||
2.4.1.320 | 1,4-β-Mannosyl-N-acetylglucosamine phosphorylase | |||||||
2.4.1.339 | β-1,2-Mannobiose phosphorylase |