Table 3.
The processing time of the method at each data processing step and the number of identified super-enhancers.
| Sample Type | Test/ Control |
Number of Reads | Processing time |
Potential super-enhancers | |||||
|---|---|---|---|---|---|---|---|---|---|
| Alignment (bowtie2) |
Conversion (samtools) | Sorting (samtools) |
Peak calling (MACS2) | Identification of super-enhancers (ROSE) | Total | ||||
| Cell line (human MCF-7) | Test | 31,418,572 | 02 m 42s | 00 m 43s | 00 m 37s | 03 m 42s | 05 m 30s | 14 m 37s | 72 |
| Control | 18,714,964 | 00 m 44s | 00 m 23s | 00 m 16s | |||||
| Mouse tissue (heart) | Test | 36,752,873 | 03 m 48s | 00 m 57s | 00 m 50s | 11 m 09s | 20 m 32s | 48 m 03s | 338 |
| Control | 85,608,717 | 06 m 53s | 02 m 17s | 01 m 37s | |||||
| Human tissue (adrenal gland) | Test | 33,443,289 | 04 m 12s | 01 m 06s | 00 m 56s | 06 m 43s | 10 m 27s | 30 m 23s | 123 |
| Control | 41,510,868 | 04 m 45s | 01 m 20s | 00 m 54s | |||||