Table 2.
The results of SARS-COV-2 N protein tertiary structure analysis
| Project Name | Results |
|---|---|
| secondary structure | |
| Alpha helix | 89/419 (21.24%) |
| Extended strand | 70/419 (16.71%) |
| Beta turn | 29/419 (6.92%) |
| Random coil | 231/419 (55.13%) |
| Tertiary structure | |
| swiss-model | |
| Seq Identity | 95.76% |
| GMQE | 0.17 |
| QMEAN | −2.02 |
| SAVES v5.0 | |
| ERRAT | |
| Overall quality factor | 93.5 |
| Prove | |
| Z − score mean | 0.833 |
| Z − score stddev | 1.336 |
| Z − score RMS | 1.572 |
| scored atoms | 230 |
| outliers | 16 |
| % outliers | 7.000 |
| Whatcheck | |
| RMS Z-scores | |
| Bond lengths | 0.702 |
| Bond angles | 1.057 |
| Omega angle restraints | 0.899 |
| Side chain planarity | 1.407 |
| Structure Z-scores | |
| 1st generation packing quality | −4.798 (poor) |
| Ramachandran plot appearance | −3.262 (poor) |
| chi-1/chi-2 rotamer normality | −3.110 (poor) |
| Backbone conformation | −28.233 (bad) |
| Verify 3D | 59.32% |
| Procheck | 87% |