TABLE 3.

Information of assembled contigs of PPVs and HMV2.

Virus	Samples	Contigs	No. of reads	Matched strains (Genbank no.)	Query cover	Identity (%)	E-value	Covered range	Covered viral gene	Sequences for phylogenetic analysis	Name of strain
PPV2	G3	1	46	MK378224	100	99.12	0	2,078–4,802	NS1-Cap	NS1	PPV-G3/YN
		2	44	MK378224	100	99.12	0	148–1,545	NS1
		3	70	MK378224	100	99.12	0	5,129–5,227	Cap
PPV3	E1	1	1,004	MK378238	100	99.52	0	2,612–4,714	NS1-Cap	NS1	PPV-E1/YN
		2	542	MK378238	100	99.52	0	27–1,648	NS1
		3	5	MK378238	100	99.52	0	1,882–2,111	NS1
HMV2	B3	1	28,323	KX882764	100	95.96	0	86–2,784	Hypothetical protein 1 and RdRp in segment 1	Hypothetical protein 1	HMV-B3/YN
	C1	1	2,673,369	KX882764	100	94.64	0	1–3,058			HMV-C1/YN
	C2	1	269,335	KX882764	100	94.88	0	1–3,045			HMV-C2/YN
	C3	1	2,422	KX882873	100	94.64	0	1–2,770			HMV-C3/YN
	D2	1	28,451	KX882764	100	95.12	0	1–2,785			HMV-D2/YN
	E1	1	44,389	KX882764	100	94.64	0	16–2,924			HMV-E1/YN
	F1	1	4,353	KX882873	100	95.53	0	70–2,910			HMV-F1/YN
	G1	1	2,115,002	KX882832	99	96.54	0	13–3,055			HMV-G1/YN
	G2	1	658	KX882764	100	97.01	0	215–2,522			HMV-G2/YN
	G3	1	28,144	KX882873	100	96.26	0	8–2,810			HMV-G3/YN
HMV2	B3	1	26,113	KX882765	100	99.02	0	17–1,651	Hypothetical protein in segment 2
	C1	1	2,120,880	KX882765	100	99.03	0	193–1,641
	C2	1	132,560	KX882765	100	99.20	0	17–1,645
	C3	1	10,258	KX882765	100	99.34	0	10–1,372
	D2	1	78,017	KX882765	100	99.34	0	17–1,647
	E1	1	40,696	KX882765	100	97.34	0	17–1,647
	F1	1	4,547	KX882765	100	97.12	0	17–1,647
	G1	1	1,562,970	KX882765	100	97.10	0	161–1,847
	G2	1	623	KX882765	100	97.16	0	17–1,636
	G3	1	18,620	KX882765	100	97.04	0	14–1,636