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[Preprint]. 2021 Feb 19:2021.02.17.431554. [Version 2] doi: 10.1101/2021.02.17.431554

Table 1:

Summary of TWAS and colocalization analyses in tissues and cell lines.

Gene symbol Tissue Discovery: GWASHGI Validation: GWASSCGG
TWAS z TWAS p PP colocalized SNP p TWAS z TWAS p PP colocalized SNP p
CXCR6 Lung −8.53 1.57×10−17 0.79* rs34068335
5.02×10−22
−4.19 2.84×10−5 ns -
T follicular helper cells - - 0.99** rs35081325
3.82×10−39
- - 0.99** rs35081325
2.49×10−10
CCR9 Whole blood 6.50 7.90×10−11 ns - 6.26 3.78×10−10 ns -

GWASHGI denotes the GWAS dataset from the Host Genetics Initiative.

GWASSCGG represents the GWAS dataset from the Severe COVID-19 GWAS Group.

PP: posterior probability.

z: z score.

p: p-value.

*:

statistically significant by the colocalization posterior probability (CLPP) from eCAVIAR.

**:

statistically significant by the regional colocalization probability (RCP) from fastENLOC.

ns: no significant colocalization from either eCAVIAR or fastENLOC.

-:

no available data.