Table 1:
Gene symbol | Tissue | Discovery: GWASHGI | Validation: GWASSCGG | ||||||
---|---|---|---|---|---|---|---|---|---|
TWAS z | TWAS p | PP | colocalized SNP p | TWAS z | TWAS p | PP | colocalized SNP p | ||
CXCR6 | Lung | −8.53 | 1.57×10−17 | 0.79* | rs34068335 5.02×10−22 |
−4.19 | 2.84×10−5 | ns | - |
T follicular helper cells | - | - | 0.99** | rs35081325 3.82×10−39 |
- | - | 0.99** | rs35081325 2.49×10−10 |
|
CCR9 | Whole blood | 6.50 | 7.90×10−11 | ns | - | 6.26 | 3.78×10−10 | ns | - |
GWASHGI denotes the GWAS dataset from the Host Genetics Initiative.
GWASSCGG represents the GWAS dataset from the Severe COVID-19 GWAS Group.
PP: posterior probability.
z: z score.
p: p-value.
statistically significant by the colocalization posterior probability (CLPP) from eCAVIAR.
statistically significant by the regional colocalization probability (RCP) from fastENLOC.
ns: no significant colocalization from either eCAVIAR or fastENLOC.
no available data.