Table 4.
Summary statistics of putative cis-elements present in the 2 kb upstream promoter region of FTs across nine species
| TF Family | Organism | Motif | Description | A. thaliana | Populus trichocarpa | M. domestica | Pyrus communis | R. occidentalis | P. armeniaca | P. avium | P. mume | P. persica | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AtFT | PtFT1 | PtFT2 | MdFT | PcFT1 | RoFT1 | RoFT2 | PaFT | PvFT | PmFT | PpFT | ||||
| CCACA box | A. thaliana | CCACA | Binding site for CO | 5 | 4 | 0 | 6 | 5 | 3 | 10 | 6 | 6 | 6 | 6 |
| CArG box | A. thaliana | CC[A/T]6GG | Binding site for MADS-domain transcription factor | 10 | 1 | 3 | 2 | 2 | 1 | 2 | 2 | 4 | 3 | 5 |
| MYB | A. thaliana | CAACAG | Binding site for MYB transcription factor | 5 | 3 | 1 | 2 | 3 | 4 | 5 | 3 | 3 | 3 | 2 |
| bHLH | A. thaliana | ATGTG/AGGTG | Binding site for MYC | 7 | 3 | 3 | 5 | 16 | 8 | 6 | 7 | 6 | 6 | 4 |
| TCT-motif | A. thaliana | TCTTAC | Part of a light-responsive element | 2 | 2 | 0 | 2 | 1 | 2 | 0 | 4 | 3 | 3 | 3 |
| GATA-motif | A. thaliana | AAGATAAGATT | Part of a light-responsive element | 0 | 1 | 0 | 1 | 1 | 2 | 2 | 0 | 0 | 0 | 0 |
| AE-box | A. thaliana | AGAAACAA | Part of a module for light response | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| G-box | A. thaliana | TACGTG | Cis-acting regulatory element involved in light responsiveness | 2 | 1 | 1 | 1 | 2 | 2 | 2 | 3 | 1 | 3 | 2 |
| GT1-motif | A. thaliana | GGTTAA | Light-responsive element | 2 | 1 | 2 | 0 | 0 | 0 | 2 | 3 | 2 | 3 | 3 |
| MSA-like | (T/C)C(T/C)AACGG(T/C)(T/C)A | Cis-regulatory element involved in cell cycle regulation | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| GARE-motif | Brassica oleracea | TCTGTTG | Gibberellin-responsive element | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 0 |
| P-box | Oryza sativa | CCTTTTG | Gibberellin-responsive element | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 |
| AP2; ERF | A. thaliana | CCGAC | Ethylene-responsive transcription factor | 7 | 3 | 5 | 8 | 6 | 8 | 6 | 2 | 4 | 2 | 4 |
| ABRE | A. thaliana | ACGTG | Cis-acting element involved in the abscisic acid responsiveness | 1 | 3 | 2 | 1 | 4 | 4 | 5 | 2 | 1 | 2 | 1 |
| LTR | Hordeum vulgare | CCGAAA | Cis-acting element involved in low-temperature responsiveness | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 1 | 0 |
| W box | A. thaliana | CCGAAA | Binding site for WRKY transcription factor | 0 | 0 | 2 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 |
The organism column indicates in which organism the motif was characterized