TABLE 1.
Codes used for groups of CDS.
Group | Code |
According to cellular function | |
Amino acid related enzymes | AARE |
Chromosome and associated proteins | CAPR |
Chaperones and folding catalysts | CHFC |
Cytoskeleton proteins | CYPR |
DNA replication proteins | DRPR |
DNA repair and recombination proteins | DRRP |
Enzymes | ENZY |
Exosome | EXOS |
Glycosyltransferases | GLYC |
Lipid biosynthesis proteins | LIBP |
Messenger RNA biogenesis | MERB |
Membrane trafficking | METR |
Mitochondrial biogenesis | MIBI |
Peptidases | PEPT |
Protein phosphatases and associated proteins | PPAP |
Prenyltransferases | PREN |
Protein kinases | PRKI |
Proteasome | PROT |
Ribosome biogenesis | RIBI |
Ribosome | RIBO |
Spliceosome | SPLI |
Translation factors | TLFA |
Transcription factors | TNFA |
Transfer RNA biogenesis | TRBI |
Transcription machinery | TRMA |
Ubiquitin system | UBSY |
According to subcellular location | |
Cell membrane | CEME |
Cytoplasm | CYTO |
Endoplasmic reticulum | ENRE |
Extracellular | EXTR |
Golgi apparatus | GOAP |
Lysosome/Vacuole | LYVA |
Mitochondrion | MITO |
Nucleus | NUCL |
Peroxisome | PERO |