Skip to main content
. 2018 Aug 30;59(4):405–417. doi: 10.1007/s13353-018-0459-0

Table 6.

BLAST results of the DNA methylation polymorphic sequences

Code Length (bp) E/HMa Patternb C → S Accession BLAST result
F1 175 AAC/TTC IV → II HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring
F2 64 AGG/TGA IV → I HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring
F3 126 ATT/TGT IV → I XM_003568528.3 PREDICTED: Brachypodium distachyon eukaryotic peptide chain release factor subunit 1-2-like (LOC100821402), mRNA
F4 138 ATT/TGT IV → I HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring
F5 175 ATT/TGT IV → II XM_020340520.1 PREDICTED: Aegilops tauschii subsp. tauschii putative receptor-like protein kinase At4g00960 (LOC109781929), mRNA
F6 175 ATC/TCA IV → I HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring
F7 163 ATC/TCA IV → I XM_020305332.1 PREDICTED: Aegilops tauschii subsp. tauschii histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like (LOC109746199), mRNA
F8 62 ACA/TGC IV → I HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring
F9 85 ACA/TGC IV → I HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring
F10 80 ATT/TCAA IV → I HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring

E, EcoRI primers; HM, HpaII/MspI primers

aPrimer combination used in amplification of MSAP fragment

bBanding pattern under control (C) and 20 ppm Al3+ treatments (S). Band types are referred to Tables 3 and 4