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. 2021 Feb 23;12:1227. doi: 10.1038/s41467-021-21380-4

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — a Scheme of the structural variations between Sh2 in B73 and Sh2 in Mo17 (the top pairwise comparison) as well as Sh2 in Mo17 and sh2-R in Ia453-sh2 (the bottom pairwise comparison). The Sh2 in B73 and Mo17 is drawn the same size as the sh2-R allele in Ia453-sh2 (blue arrows). Features within each allele are drawn to scale. The syntenic regions were drawn as yellow boxes and connected using blue wedges. The annonated TE elements are only shown in Ia453-sh2 for simplicity. Two insertion sequences in the sh2-R allele contain a variety of predicted TE elements. b Two predicted gene models annotated in the sh2-R loci and their expression profile represented as the number of reads per Gb of total RNA-seq aligned reads. c Comparison of the predicted amino acid sequences of sh2-R (Zm00045a021195) from Ia453-sh2 with Sh2 from six field corn lines, using the Geneious multiple sequence alignment. Conserved amino acids are marked in gray, gaps are indicated as lines and differences are highlighted with different colors. The identity panel displays the identity across all amino acid sequences for every position. Small green and red triangles are indicating start and stop codons, respectively.