Antibodies |
|
BMI1 antibody (1:200) |
Cell Signaling Technology |
6964 |
GALC antibody (1:200) |
Santa Cruz Biotechnology |
SC-67352 |
GFAP antibody (1:300) |
Cell Signaling Technology |
3670 |
NESTIN antibody (1:200) |
Millipore |
MAB5326 |
SOX2 antibody (1:400) |
Cell Signaling Technology |
23064 |
TLX antibody (5 μg/mL) |
Invitrogen |
PA5-40484 |
TUJ1 antibody (1:200) |
Millipore |
MAB1637 |
P16 antibody (1:1,000) |
Santa Cruz Biotechnology |
SC-81157 |
Nucleolin antibody (1–2 μg/mL) |
Abcam |
Ab-22758 |
Phospho-S6 antibody (1:1,000) |
Cell Signaling Technology |
2215S |
Phalloidin (1:400) |
Thermo Fisher Scientific |
A12380 |
DAPI (4′,6-diamidino-2-phenylindole, dilactate) (300 nM) |
BioLegend |
422801 |
|
Chemicals, peptides, and recombinant proteins |
|
GlutaMAX-I |
Gibco |
35050-061 |
Advanced DMEM/F12 |
Gibco |
12634-010 |
Eagle’s minimum essential medium (EMEM) |
ATCC |
30-2003 |
Matrigel matrix basement membrane |
Corning |
356237 |
B27 Supplement without vitamin A |
Gibco |
12587-010 |
Recombinant human EGF |
Peprotech |
AF-100-15 |
Recombinant human FGF-basic (BFGF) |
Peprotech |
AF-100-18B |
Hydrocortisone stock solution (200×) |
STEMCELL Technologies |
07925 |
Penicillin and streptomycin (10,000 U/mL) |
Gibco |
15140-122 |
Sodium pyruvate |
Himedia |
TCL015-100mL |
Primocin |
InvivoGen |
Ant-pm-1 |
Accutase |
STEMCELL |
07920 |
37% Formaldehyde |
Fisher Bioreagents |
BP-531-500 |
Phosphate buffer saline (PBS) without calcium and magnesium |
Lonza |
17-516F |
Triton X-100 |
Sigma-Aldrich |
X100-100mL |
Ketamine |
Henry Schein |
NDC 11695-0702-1 |
Xylazine |
Akom |
NDC 59399-110-20 |
Minimal essential medium (MEM) |
Gibco |
11090-081 |
Fetal bovine serum (FBS) |
Sigma-Aldrich |
F4135-500 mL |
Bovine serum albumin (BSA), Fraction V |
Sigma-Aldrich |
2930-100GM |
Cell recovery solution (CRS) |
Corning |
354253 |
Betadine |
Fisher Scientific |
19027132 |
Hydrogen peroxide (3%) |
Sigma-Aldrich |
88597-100mL |
Drugs for testing and screening |
Local pharmacy or commercial sources (e.g., Selleck) |
N/A |
|
Critical commercial assays |
|
RNeasy Kit |
Qiagen |
75162 |
SuperScript IV VILO MasterMix |
Invitrogen |
11756050 |
SYBR Green Master Mix |
Thermo Fisher Scientific |
A25742 |
CellTiter-Glo Assay |
Promega |
G7572 |
|
Biological samples |
|
Surgical specimen of tumor removed from GBM patients |
Surgical facility |
N/A |
|
Experimental models: organisms/strains |
|
6- to 12-week-old NSG mice |
The Jackson Laboratory |
NOD.Cg-PrkdcscidIl2rgtm1Wjl/SzJ |
|
Other |
|
Ultra-low attachment 96-well plates |
Grenier |
655185 |
Ultra-low attachment 384-well plates |
Grenier |
781186 |
Falcon 40 μm cell strainer |
Corning |
352340 |
IncuCyte HD system |
Sartorius |
N/A |
Nikon A1R Si confocal microscope |
Nikon |
N/A |
IVIS Spectrum imaging station |
PerkinElmer |
N/A |
StepOne plus qPCR instrument |
Applied Biosystems |
4376600 |
Victor3 multilabel plate reader |
PerkinElmer |
1420-011 |
Stereotactic apparatus |
Stoelting |
51901 |
Stereotactic probe holder attachment |
Stoelting |
51681 |
Micromotor high-speed drill with drill bits |
Stoelting |
51449 |
Drill bit, 45 mm |
Stoelting |
514551 |
10 μL syringe, Model 701 |
Hamilton |
7635-01 |
30 gauge removable needle |
Hamilton |
7803-07 |
Rectal probe |
Stoelting |
5060-040 |
Vetbond tissue adhesive |
3M |
1469SB |
Bonewax |
Ethicon |
W31G |
Microdrill |
Foredom |
MH-170 |
Micromotor control |
Foredom |
HP4-917 |
Foot speed control |
Foredom |
HP4-970 |
Homeothermic monitoring system |
Harvard Apparatus |
55-7020 |
Remote infuse/withdraw PHD ULTRA Nanomite programmable syringe pump |
Harvard Apparatus |
70-3601 |
Pura lube ophthalmic ointment |
Dechra |
NDC 17033-211-040 |
Veet hair removal cream |
Any commercial source (e.g., Amazon) |
N/A |
Syringe (1 mL) |
BD |
309659 |
Syringe needle (27 gauge) |
BD |
305109 |
Scalpels |
BD |
371610 |
Sodium chloride (0.9%) |
Hospira |
NDC 0509-4888-06 |
|
Software and algorithms |
|
ELDA software |
Walter + Eliza Hall |
http://bioinf.wehi.edu.au/software/elda/ |
TCGA database |
NHGRI & NCI |
https://portal.gdc.cancer.gov/ |
Prism 8 |
GraphPad |
https://www.graphpad.com/scientific-software/prism/ |
Drug synergy software |
Synergy Finder |
https://synergyfinder.fimm.fi |
Image analysis software |
NIH |
https://imagej.nih.gov/ij/ |
StepOne software |
Applied Biosystems |
N/A |
IVIS imaging software |
PerkinElmer |
N/A |