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. 2021 Feb 18;2(1):100345. doi: 10.1016/j.xpro.2021.100345
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

BMI1 antibody (1:200) Cell Signaling Technology 6964
GALC antibody (1:200) Santa Cruz Biotechnology SC-67352
GFAP antibody (1:300) Cell Signaling Technology 3670
NESTIN antibody (1:200) Millipore MAB5326
SOX2 antibody (1:400) Cell Signaling Technology 23064
TLX antibody (5 μg/mL) Invitrogen PA5-40484
TUJ1 antibody (1:200) Millipore MAB1637
P16 antibody (1:1,000) Santa Cruz Biotechnology SC-81157
Nucleolin antibody (1–2 μg/mL) Abcam Ab-22758
Phospho-S6 antibody (1:1,000) Cell Signaling Technology 2215S
Phalloidin (1:400) Thermo Fisher Scientific A12380
DAPI (4′,6-diamidino-2-phenylindole, dilactate) (300 nM) BioLegend 422801

Chemicals, peptides, and recombinant proteins

GlutaMAX-I Gibco 35050-061
Advanced DMEM/F12 Gibco 12634-010
Eagle’s minimum essential medium (EMEM) ATCC 30-2003
Matrigel matrix basement membrane Corning 356237
B27 Supplement without vitamin A Gibco 12587-010
Recombinant human EGF Peprotech AF-100-15
Recombinant human FGF-basic (BFGF) Peprotech AF-100-18B
Hydrocortisone stock solution (200×) STEMCELL Technologies 07925
Penicillin and streptomycin (10,000 U/mL) Gibco 15140-122
Sodium pyruvate Himedia TCL015-100mL
Primocin InvivoGen Ant-pm-1
Accutase STEMCELL 07920
37% Formaldehyde Fisher Bioreagents BP-531-500
Phosphate buffer saline (PBS) without calcium and magnesium Lonza 17-516F
Triton X-100 Sigma-Aldrich X100-100mL
Ketamine Henry Schein NDC 11695-0702-1
Xylazine Akom NDC 59399-110-20
Minimal essential medium (MEM) Gibco 11090-081
Fetal bovine serum (FBS) Sigma-Aldrich F4135-500 mL
Bovine serum albumin (BSA), Fraction V Sigma-Aldrich 2930-100GM
Cell recovery solution (CRS) Corning 354253
Betadine Fisher Scientific 19027132
Hydrogen peroxide (3%) Sigma-Aldrich 88597-100mL
Drugs for testing and screening Local pharmacy or commercial sources (e.g., Selleck) N/A

Critical commercial assays

RNeasy Kit Qiagen 75162
SuperScript IV VILO MasterMix Invitrogen 11756050
SYBR Green Master Mix Thermo Fisher Scientific A25742
CellTiter-Glo Assay Promega G7572

Biological samples

Surgical specimen of tumor removed from GBM patients Surgical facility N/A

Experimental models: organisms/strains

6- to 12-week-old NSG mice The Jackson Laboratory NOD.Cg-PrkdcscidIl2rgtm1Wjl/SzJ

Other

Ultra-low attachment 96-well plates Grenier 655185
Ultra-low attachment 384-well plates Grenier 781186
Falcon 40 μm cell strainer Corning 352340
IncuCyte HD system Sartorius N/A
Nikon A1R Si confocal microscope Nikon N/A
IVIS Spectrum imaging station PerkinElmer N/A
StepOne plus qPCR instrument Applied Biosystems 4376600
Victor3 multilabel plate reader PerkinElmer 1420-011
Stereotactic apparatus Stoelting 51901
Stereotactic probe holder attachment Stoelting 51681
Micromotor high-speed drill with drill bits Stoelting 51449
Drill bit, 45 mm Stoelting 514551
10 μL syringe, Model 701 Hamilton 7635-01
30 gauge removable needle Hamilton 7803-07
Rectal probe Stoelting 5060-040
Vetbond tissue adhesive 3M 1469SB
Bonewax Ethicon W31G
Microdrill Foredom MH-170
Micromotor control Foredom HP4-917
Foot speed control Foredom HP4-970
Homeothermic monitoring system Harvard Apparatus 55-7020
Remote infuse/withdraw PHD ULTRA Nanomite programmable syringe pump Harvard Apparatus 70-3601
Pura lube ophthalmic ointment Dechra NDC 17033-211-040
Veet hair removal cream Any commercial source (e.g., Amazon) N/A
Syringe (1 mL) BD 309659
Syringe needle (27 gauge) BD 305109
Scalpels BD 371610
Sodium chloride (0.9%) Hospira NDC 0509-4888-06

Software and algorithms

ELDA software Walter + Eliza Hall http://bioinf.wehi.edu.au/software/elda/
TCGA database NHGRI & NCI https://portal.gdc.cancer.gov/
Prism 8 GraphPad https://www.graphpad.com/scientific-software/prism/
Drug synergy software Synergy Finder https://synergyfinder.fimm.fi
Image analysis software NIH https://imagej.nih.gov/ij/
StepOne software Applied Biosystems N/A
IVIS imaging software PerkinElmer N/A