Table 3.

Benchmarking metrics for InDels of different size ranges in NA24385 (truth set NIST v3.3.2, total bases = 12,626,866) for the regions within ~ 7000 clinically relevant genes (as specified in “Methods” section)

Size of InDels in NA24385	Truth total	TP	FP	FN	TN	NPA	Precision	Recall
1–10	145	136	12	9	12,626,709	100	91.89	93.79
11–20	9	9	0	0	12,626,857	100	100	100
21–50	3	3	0	0	12,626,863	100	100	100
All Indels	157	148	12	9	12,626,697	100	92.50	94.27