Table 4.
Genomic comparisons between Burkholderia cepacia COPS and B. cepacia strains based on genome comparisons and multilocus sequence analysis.
| Genome comparisons | Multilocus sequence analysis | |||||||
|---|---|---|---|---|---|---|---|---|
| Strain | GC (%) | ANIm (%) | ANIb (%) | dDDH (%) | Tetra | Locus | Identity (%) | Allele |
| Burkholderia cepacia RB-39 | 65.91 | 93.68 | 91.82 | 51.00 | 0.99738 | atpD | 100 | atpD 235 |
| Burkholderia cepacia DDS 7H-2 | 67.05 | 92.01 | 90.20 | 43.30 | 0.99559 | gltB | 100 | gltB 707 |
| Burkholderia cepacia DWS 16B-4 | 67.07 | 92.01 | 90.24 | 43.30 | 0.99561 | gyrB | 99.7797 | gyrB 1041 |
| Burkholderia cepacia LMG 16656 | 66.88 | 92.07 | 90.08 | 43.60 | 0.99553 | lepA | 99.4962 | lepA 3 |
| Burkholderia cepacia MSMB1302 | 66.81 | 96.22 | 95.19 | 67.00 | 0.99924 | phaC | 99.4805 | phaC 279 |
| Burkholderia cepacia LK13 | 66.47 | 98.72 | 98.04 | 87.80 | 0.99948 | recA | 100 | recA 1 |
| Burkholderia cepacia NBRC 14074 | 66.67 | 97.56 | 96.86 | 77.20 | 0.99929 | trpB | 100 | trpB 21 |
| Burkholderia cepacia NCTC10743 | 66.60 | 97.56 | 96.86 | 77.10 | 0.99932 | |||
| Burkholderia cepacia ATCC 25416 | 66.58 | 97.56 | 96.87 | 77.10 | 0.99935 | |||
| Burkholderia cepacia GG4 | 66.68 | 91.30 | 88.62 | 36.80 | 0.99608 | |||
| Burkholderia cepacia JBK9 | 66.82 | 92.35 | 90.59 | 45.00 | 0.99686 | |||
| Burkholderia cepacia MSMB591WGS | 66.43 | 98.71 | 98.13 | 87.40 | 0.99932 | |||
| Burkholderia cepacia MSMB1224WGS | 66.86 | 97.94 | 97.23 | 80.70 | 0.99892 | |||
| Burkholderia cepacia LO6 | 66.99 | 89.93 | 86.75 | 36.20 | 0.97175 | |||
| Burkholderia sp. LK4 | 66.46 | 98.78 | 98.05 | 87.80 | 0.99950 | |||
| Burkholderia reimsis BE51 | 66.37 | 98.72 | 98.05 | 86.50 | 0.99938 | |||
| Burkholderia lata LK27 | 66.76 | 98.53 | 96.91 | 87.90 | 0.99926 | |||
Bold values based on ANI, dDDH, and TETRA (threshold of ≥ 96%, ≥ 70%, and TETRA > 0.999%, respectively) represent that strains belong to the same genomic species, whereas in multilocus sequence analysis, bold values represent new alleles of housekeeping genes within Burkholderia spp.