TABLE 3.
QTL mapped for cooking time (CKT) and water absorption capacity (WAC) in the MAGIC population based on composite interval mapping using haplotype prediction with the procedure for additive effects (ICIM-ADD).
| QTL name | Chr. | Pos. (cM) | Left marker namea | Right marker name | LOD | PVE (%)b | Interval size (Mbp) |
| CKT3.1 | Pv03 | 1.5 | Pv2.1_03_592656_G/A | Pv2.1_03_755530_G/C | 6.96 | 7.07 | 0.16 |
| CKT4.1 | Pv04 | 47 | Pv2.1_04_41895594_A/T | Pv2.1_04_41987047_A/T | 7.03 | 7.60 | 0.09 |
| CKT7.1 | Pv07 | 63.5 | Pv2.1_07_31833933_A/C | Pv2.1_07_32077935_T/C | 11.39 | 12.18 | 0.24 |
| CKT8.1 | Pv08 | 77 | Pv2.1_08_60150805_T/C | Pv2.1_08_60180011_A/G | 9.01 | 9.77 | 0.02 |
| WAC11.1 | Pv11 | 75 | Pv2.1_11_51537051_G/C | Pv2.1_11_51584833_C/G | 7.96 | 8.69 | 0.04 |
Information on founder haplotype effects is in Supplementary Table 4.
aPhysical position and polymorphism of the SNP according to reference version 2.1.
bPhenotypic variation explained.