Table 2. Seven TWAS significant genes were validated in the ADNI neuroimaging data.
Gene | AD TWAS | ADNI validation | ||||
---|---|---|---|---|---|---|
TWAS_Z | TWAS_P | OR | 95%CI | SE | P | |
QPCTL | -23.332 | 2.10 × 10−120 | 0.760 | 0.656 to 0.882 | 0.076 | 2.89 × 10−4 |
DMPK | -22.672 | 8.54 × 10−114 | 0.774 | 0.666 to 0.900 | 0.077 | 8.77 × 10−4 |
ERCC2 | 17.870 | 2.01× 10−71 | 1.199 | 1.040 to 1.382 | 0.073 | 1.25 × 10−2 |
CD3EAP | 14.916 | 2.60× 10−50 | 1.396 | 1.199 to 1.625 | 0.078 | 1.70 × 10−5 |
APOE | -12.901 | 4.43× 10−38 | 0.814 | 0.707 to 0.938 | 0.072 | 4.37 × 10−3 |
PPP1R37 | -6.710 | 1.95× 10−11 | 0.834 | 0.722 to 0.964 | 0.074 | 1.41 × 10−2 |
PVRL2 | 4.458 | 8.26× 10−6 | 1.166 | 1.010 to 1.346 | 0.073 | 3.65 × 10−2 |
OR-values, 95% CI, SE-values and P-values are from binary logistic regression.
AD = Alzheimer’s disease, ADNI = Alzheimer’s Disease Neuroimaging Initiative
TWAS = transcriptome-wide association study, OR = odds ratio, CI = confidence interval, SE = standard error.
The abbreviation of genes is referred to at https://www.ncbi.nlm.nih.gov/gen.