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. 2021 Feb 25;17(2):e1009363. doi: 10.1371/journal.pgen.1009363

Table 2. Seven TWAS significant genes were validated in the ADNI neuroimaging data.

Gene AD TWAS ADNI validation
TWAS_Z TWAS_P OR 95%CI SE P
QPCTL -23.332 2.10 × 10−120 0.760 0.656 to 0.882 0.076 2.89 × 10−4
DMPK -22.672 8.54 × 10−114 0.774 0.666 to 0.900 0.077 8.77 × 10−4
ERCC2 17.870 2.01× 10−71 1.199 1.040 to 1.382 0.073 1.25 × 10−2
CD3EAP 14.916 2.60× 10−50 1.396 1.199 to 1.625 0.078 1.70 × 10−5
APOE -12.901 4.43× 10−38 0.814 0.707 to 0.938 0.072 4.37 × 10−3
PPP1R37 -6.710 1.95× 10−11 0.834 0.722 to 0.964 0.074 1.41 × 10−2
PVRL2 4.458 8.26× 10−6 1.166 1.010 to 1.346 0.073 3.65 × 10−2

OR-values, 95% CI, SE-values and P-values are from binary logistic regression.

AD = Alzheimer’s disease, ADNI = Alzheimer’s Disease Neuroimaging Initiative

TWAS = transcriptome-wide association study, OR = odds ratio, CI = confidence interval, SE = standard error.

The abbreviation of genes is referred to at https://www.ncbi.nlm.nih.gov/gen.