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. Author manuscript; available in PMC: 2021 Feb 25.
Published in final edited form as: Cell Rep. 2020 Dec 1;33(9):108418. doi: 10.1016/j.celrep.2020.108418

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Anti-TRIM11 Millipore Cat# ABC926; RRID: AB_2861378
Anti-α-synuclein Cell Signaling Cat# 2642; RRID: AB_2192679
Anti-α-synuclein phopho-Ser129 Abcam Cat# ab168381; RRID: AB_2728613
Anti-α-synuclein phopho-Ser129 Biolegend Cat# 825701; RRID: AB_2564891
Anti-SUMO2/3 Abgent Cat# AP1224a; RRID: AB_2198423
Anti-GFP mouse mAb Clontech Cat# 632380; RRID: AB_10013427
Anti-GFP rabbit pAb Invitrogen Cat#: A11122; RRID:AB_221569
Anti-HA rabbit pAb Santa Cruz Cat# sc-805; RRID: AB_631618
Anti-HA rabbit mAb (C29F4) Cell Signaling Cat# 3724; RRID: AB_1549585
Anti-HA Affinity Matrix Rat mAb Sigma-Aldrich Cat# 11815016001; RRID: AB_390914
Anti-GAPDH Santa Cruz Cat# sc-32233; RRID: AB_627679
Anti-GST GE Healthcare Life Sciences Cat# 27457701; RRID: AB_771432
Anti-β-actin Sigma-Aldrich Cat# A5441; RRID: AB_476744
Anti-α-tubulin Sigma-Aldrich Cat# T9026; RRID: AB_477953
Anti-Flag rabbit mAb Cell signaling Cat# 14793; RRID: AB_2572291
Anti-Flag mouse mAb (M2) Sigma-Aldrich Cat# F1804; RRID: AB_262044
Anti-FLAG M2 agarose beads Sigma-Aldrich Cat# A1205, RRID: AB_2687448
Anti-Hsp70 Enzo Life Sciences Cat# ADI-SPA-810-D; RRID: AB_2039260
Anti-Hsp90 Cell Signaling Cat# 4874; RRID: AB_2121214
Anti-NeuN Millipore Cat# MAB377; RRID: AB_2298772
Anti-Tyrosine Hydroxylase Millipore Cat# 657012; RRID:AB_696697
Bacterial and Virus Strains
BL21(DE3) ThermoFisher Cat# C600003
DH5α Competent Cells ThermoFisher Cat# 18258012
TRIM11 lentiviral vector This paper N/A
TRIM11 2EA lentiviral vector This paper N/A
mCherry-TRIM11 lentiviral vector (Chen et al., 2017) N/A
mCherry lentiviral vector (Chen et al., 2017) N/A
α-Syn Lentiviral vector This paper N/A
TRIM11 AAV9 vector This paper N/A
GFP AAV9 vector This paper N/A
Chemicals, Peptides, and Recombinant Proteins
SUMO E1 Boston Biochem Cat# E-315
SUMO E2 (UbcH9) Boston Biochem Cat# E2-465
6xHis-SUMO2 Boston Biochem Cat# UL-753
Human α-synuclein The Michael J. Fox Foundation N/A
Human α-synuclein S87N (Luna et al., 2018) N/A
Mouse α-synuclein (Luna et al., 2018) N/A
GFP This paper N/A
GST This paper N/A
GST-TRIM11 This paper N/A
GST-TRIM11 2EA This paper N/A
6xHis-TRIM11 This paper N/A
6xHis-TRIM11 ∆R This paper N/A
6xHis-TRIM11 ∆B This paper N/A
6xHis-TRIM11 ∆CC This paper N/A
6xHis-TRIM11 N This paper N/A
6xHis-TRIM11 C This paper N/A
6xHis-TRIM11 M6 This paper N/A
6xHis-TRIM11 LA This paper N/A
Flag-Atxn1 82Q-HA This paper N/A
GST-TRIM21 This paper N/A
Flag-PML (isoform VI) This paper N/A
Hsp40 Enzo Life Sciences Cat# ADI-SPP-400
Hsp70 Enzo Life Sciences Cat# ADI-NSP-555
Hsp104 (Jackrel et al., 2014) N/A
Hsp104 A503S (Jackrel et al., 2014) N/A
Luciferase Sigma-Aldrich Cat# L9506
Citrate Synthase Sigma-Aldrich Cat# C3260
Mg2+-ATP Sigma-Aldrich Cat# A9187
Phosphocreatine Sigma-Aldrich Cat# P1937
Creatine kinase Sigma-Aldrich Cat# C3755
FLAG Peptide Sigma-Aldrich Cat# F3290
MG132 Sigma-Aldrich Cat# C2211
Benzonase Sigma-Aldrich Cat# E1014
TEV protease Sigma-Aldrich Cat# T4455
Isopropyl-1-thio-D-galactopyranoside (IPTG) Sigma-Aldrich Cat# I6758
Complete protease inhibitor Cocktail Sigma-Aldrich Cat# 11697498001
L-Glutathione reduced Sigma-Aldrich Cat# G4251
Ni-NTA Agarose Qiagen Cat# 30230
Glutathione Superflow Agarose Thermo Fisher Cat# 25236
TRIzol Reagent Invitrogen Cat# 15596
Amylose resin New England BioLabs Cat# E8021
4’,6-diamidino-2-phenylindole (DAPI) Vector Laboratories H-1200
Critical Commercial Assays
ATP Affinity Test Kit Jena Bioscience GmbH Cat# AK-102
MTT assay Sigma-Aldrich Cat# M2128
Phusion® High-Fidelity PCR Kit NEB Cat# E0553
First-strand cDNA Synthesis System Marligen Biosciences Cat# 11801
CellTiter-Glo Luminescent Cell Viability Assay Promega Cat# G7570
Super Sensitive™ IHC Detection System BioGenex Cat# QD400
Experimental Models: Cell Lines
HCT116 ATCC Cat# CCL-247; RRID: CVCL_0291
A549 ATCC Cat# CCL-185; RRID: CVCL_0023
SH-SY5Y ATCC Cat# CRL-2266; RRID: CVCL_0019
HeLa ATCC Cat# CCL-2; RRID: CVCL_0030
HEK293T ATCC Cat# CRL-11268; RRID: CVCL_0063
QBI-293 QBiogene N/A
Mouse primary neurons Penn Neuron Culture Service Center and our own lab N/A
Experimental Models: Organisms/Strains
Mouse: male C3H/HeJ Jackson Laboratories Stock# 000659
Oligonucleotides
siRNAs target mouse TRIM11 Santa Cruz Cat# sc-76735
siRNA target human TRIM19 Santa Cruz Cat# sc-36284
siRNAs target Human TRIM11 IDT Table S1
Negative control siRNA IDT Table S1
RT-PCR primers for human and/or mouse TRIM11, Hsp70, Hsp90, and GAPDH IDT Table S1
Recombinant DNA
pcDNA3.1-Flag-TRIM11 This paper N/A
pcDNA3.1-Flag-TRIM11 ∆R This paper N/A
pcDNA3.1-Flag-TRIM11 ∆B This paper N/A
pcDNA3.1-Flag-TRIM11 ∆CC This paper N/A
pcDNA3.1-Flag-TRIM11 N This paper N/A
pcDNA3.1-Flag-TRIM11 C This paper N/A
pcDNA3.1-Flag-TRIM11 M6 This paper N/A
pcDNA3.1-Flag-TRIM11 2EA This paper N/A
pcDNA3.1-Flag-TRIM11 LA This paper N/A
pEGFP-C1-TRIM11 This paper N/A
pEGFP-C1-Flag-TRIM11 This paper N/A
pEGFP-C1-TRIM11 LA This paper N/A
pEGFP-C1-Hsp70 This paper N/A
pRK5-Flag-TRIM19 (VI) (Guo et al., 2014) N/A
pRK5-mCherry-TRIM19 (VI) This paper N/A
pRK5-Flag-TRIM21 This paper N/A
pRK5-His-SUMO2 (Guo et al., 2014) N/A
pRK5-GFP-Atxn1 82Q (Guo et al., 2014) N/A
pRK5-HA-Atxn1 82Q-Flag (Guo et al., 2014) N/A
pRK5-Flag-Atxn1 82Q (Guo et al., 2014) N/A
pRK5-Flag-Atxn1 30Q (Guo et al., 2014) N/A
pRK5-Flag-Luciferase (Guo et al., 2014) N/A
pRK5-Flag-NLS-Luciferase (Guo et al., 2014) N/A
pTRPE (Posey et al., 2016) N/A
pTRPE-TRIM11 This paper N/A
pTRPE-TRIM11 2EA This paper N/A
pTRPE-α-synuclein This paper N/A
pTRPE-GFP-Atxn1 82Q This paper N/A
pTRPE-mCherry (Chen et al., 2017) N/A
pTRPE-mCherry-TRIM11 (Chen et al., 2017) N/A
AAV9-GFP Penn Gene Therapy Vector Core N/A
AAV9-TRIM11 Penn Gene Therapy Vector Core N/A
pFastBac-GST-TRIM11 This paper N/A
pGEX-1ZT-TRIM11 This paper N/A
pGEX-1ZT-TRIM11 2EA This paper N/A
pMAL-c2X-TRIM11-6xHis This paper N/A
pMAL-c2X-TRIM11 ∆R-6xHis This paper N/A
pMAL-c2X-TRIM11 ∆B-6xHis This paper N/A
pMAL-c2X-TRIM11 ∆CC-6xHis This paper N/A
pMAL-c2X-TRIM11 N-6xHis This paper N/A
pMAL-c2X-TRIM11 C-6xHis This paper N/A
pMAL-c2X-TRIM11 M6-6xHis This paper N/A
pMAL-c2X-TRIM11 LA-6xHis This paper N/A
pTAT-HA Gift from Steven Dowdy Addgene Plasmid Cat# 35612
pTAT-HA-TRIM11 This paper N/A
Luciferase-6xHis (Sharma et al., 2010) N/A
pPROEX HTb-6xHis-TEV-GFP (Jackrel and Shorter, 2014) N/A
Software and Algorithms
GraphPad Prism 7 GraphPad https://www.graphpad.com/scientific-software/prism/
ImageJ ImageJ.Ink https://imagej.net/Welcome
In Cell Developer Toolbox 1.9.2 software GE Healthcare N/A
ZEN lite Carl Zeiss Microscopy N/A