Table 3.
Prevalence of dupA cluster in DU, NCGC, and CG.
| Module | T4SS genes | DU (%), n = 46 | NCGC (%), n = 51 | CG (%), n = 39 | Total (%), n = 136 |
|---|---|---|---|---|---|
| L1 (n = 23) | xerT | 4 (8.7) | 9 (17.6) | 10 (25.6) | 23 (16.9) |
| virB6 | 4 (8.7) | 9 (17.6) | 10 (25.6) | 23 (16.9) | |
| L2 (n = 4) | xerT | 0 | 3 (5.8) | 1 (2.5) | 4 (2.9) |
| virB6 | 0 | 3 (5.8) | 1 (2.5) | 4 (2.9) | |
| C1 (n = 27) | virD2 | 4 (8.7) | 13 (25.5) | 10 (25.6) | 27 (19.8) |
| virD4 | 4 (8.7) | 10 (25.6) | 9 (23.0) | 23 (16.9) | |
| virB11 | 4 (8.7) | 10 (25.6) | 9 (23.0) | 23 (16.9) | |
| virB10 | 4 (8.7) | 11 (21.5) | 10 (25.6) | 25 (18.3) | |
| virB9 | 4 (8.7) | 12 (23.5) | 10 (25.6) | 26 (19.1) | |
| R1 (n = 27) | virB8 | 4 (8.7) | 12 (23.5) | 10 (25.6) | 26 (19.1) |
| virB7 | 4 (8.7) | 13 (25.5) | 10 (25.6) | 27 (19.8) | |
| virB4 (dupA) | 4 (8.7) | 9 (17.6) | 8 (20.5) | 21 (15.4) | |
| virB3 | 4 (8.7) | 9 (17.6) | 8 (20.5) | 21 (15.4) | |
| virB2 | 4 (8.7) | 9 (17.6) | 8 (20.5) | 21 (15.4) | |
| Incomplete dupA cluster | 0 | 4 (7.8) | 2 (5.1) | 6 (4.4) | |
| Complete dupA cluster | 4 (8.7) | 9 (17.6) | 8 (20.5) | 21 (15.4) | |
| Incomplete dupA cluster and cagPAI | 0 | 3 (5.8) | 1 (2.5) | 4 (2.9) | |
| Complete dupA cluster and cagPAI | 4 (8.7) | 9 (17.6) | 7 (17.9) | 20 (14.7) | |