Table 2.
The list of virus-host reads detected in tumor tissues of EBL cattle.
| Sample name | IS | Chromosome | Host-left | Host-right | Reads.total | Strand | Gene located within 1000bp | Within repetitive sequence | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5'end | 3'end | Number of reads | 5'end | 3'end | Number of reads | Gene name | Region | Name | |||||
| EBL1 | IS1 | chr14 | 4,446,728 | 4,447,242 | 2971 | 4,447,234 | 4,447,745 | 4113 | 7084 | + | FAM135B | SINE | − |
| IS2 | chr17 | 35,540,227 | 35,540,728 | 966 | 35,540,721 | 35,541,235 | 1206 | 2172 | + | − | LTR | ERV3-163_I-int | |
| IS3 | chr28 | 41,855,125 | 41,855,596 | 929 | 41,855,586 | 41,856,050 | 1031 | 1960 | + | − | LINE | − | |
| EBL2 | IS1 | chr13 | 77,065,395 | 77,065,855 | 654 | 77,065,847 | 77,066,342 | 671 | 1325 | + | LOC112449387 | − | − |
| IS2 | chr14 | 70,565,534 | 70,565,992 | 1136 | 70,565,981 | 70,566,456 | 872 | 2008 | − | FAM92A | − | − | |
| EBL3 | IS1 | chr1 | 89,183,663 | 89,184,176 | 1008 | 89,184,165 | 89,184,695 | 1275 | 2283 | + | − | − | − |
| IS2 | chr28 | 15,806,809 | 15,807,260 | 559 | 15,807,251 | 15,807,695 | 452 | 1011 | − | ANK3 | − | − | |
| EBL4 | IS1 | chr17 | 51,625,289 | 51,625,860 | 926 | 51,625,851 | 51,626,422 | 1228 | 2154 | + | LOC100847522 | LINE | L2b |
IS ID of each integration site, host-left, host-right nucleotide position of virus-host chimeric reads as shown in Fig. 2A, number of reads the number of virus-host chimeric reads around each IS, strand direction of BLV genome to the host genome, FAM135B Family With Sequence Similarity 135 Member B, FAM92A family with sequence similarity 92 member A, ANK3 Ankyrin 3.