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. 2021 Feb 25;11:4609. doi: 10.1038/s41598-021-83662-7

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Transcriptional changes between PDX and organoids models reflect differences in cell composition. (A) Upregulated genes in organoids vs. PDX in early and late passages. (B) Ingenuity pathway analysis of genes upregulated in organoids reveals enrichment of lipid synthesis and metabolism genes. (C) Downregulated genes in organoids vs. PDX in early and late passages. (D) Ingenuity pathway analysis of genes downregulated in organoids reveals enrichment of extracellular matrix genes.