Table 2.
Interactions between protein and cofactor and/or substrate
Ring | Wt-Eholo | Interaction | Ring | R173W-ES2 | Wt-ES2 (56MR) | Interaction | Mutations | |
---|---|---|---|---|---|---|---|---|
C1 | P101 | P101 | Pyrrole: π-stack | – | ||||
T102 | T102 | Ac: H-bond | – | |||||
V215 | V215 | Pr: H-bond (main chain) | V215E/M | (Bustad et al., 2013; Schneider-Yin et al., 2008) | ||||
C2 | S75A | – | Ac: vdW | |||||
K74A | – | Ac: H-bond | – | |||||
– | F77B | Pyrrole: π-stack | – | |||||
K98 | K98 | N: H-bond (main chain) | K→R | (Kauppinen et al., 1995) | ||||
D99 | D99A | Pyrrole: vdW | D→G/H/N | (Floderus et al., 2002; Kauppinen and von und zu Fraunberg, 2002) | ||||
S262 | S262 | Pr: H-bond | – | |||||
S262B | Ac: H-bond | – | ||||||
C1 | K98 | Ac: H-bond | S1 | K98 | K98 | Ac: H-bond | K→R | (Kauppinen et al., 1995) |
D99 | N: H-bond | D99 | D99 | N: H-bond | D→G/H/N | (Floderus et al., 2002; Kauppinen and von und zu Fraunberg, 2002) | ||
S146 | Pr: vdW | – | S146 | Pr: vdW | – | |||
S147 S147 |
Ac: H-bond Pr: H-bond (main chain) |
S147 | S147 | Ac: H-bond | S→P | (Whatley et al., 2009) | ||
R149 | Ac: Salt bridge | R149 | R149 | Ac: Salt bridge | R→L/P/Q | (Delfau et al., 1991; Gu et al., 1994; Kauppinen et al., 1995; Yang et al., 2008) | ||
R150 | Pr: Salt bridge | – | – | |||||
R173 | Pr: Salt bridge | – | R173 | Pr: Salt bridge | R→G/Q/W | (Delfau et al., 1990; Kauppinen et al., 1992; Mendez et al., 2009) | ||
C2 | S96 | Pr: H-bond | S2 | S96 | S96 | Pr: H bond | S→F | (Kauppinen and von und zu Fraunberg, 2002) |
K98 | Ac: H-bond | K98 | K98 | Ac: H-bond | K→R | (Kauppinen et al., 1995) | ||
D99 | N: H-bond | – | D99A | N: H-bond | D→G/H/N | (Floderus et al., 2002; Kauppinen and von und zu Fraunberg, 2002) | ||
R150 | Pr: Salt bridge | R150 | R150 | Ac: Salt bridge | – | |||
A189 | Ac: H-bond (main chain) | A189 | A189 | Ac: H bond (main chain) | – | |||
R195 | Pr: Salt bridge | R195 | R195 | Pr: salt bridge | R→C/H | (Kauppinen et al., 1995; Whatley et al., 2009) | ||
Q217 | Pr: vdW | – | Q217B | Pr: vdW | Q→H/L/R | (Kuo et al., 2011; Puy et al., 1997; Schneider-Yin et al., 2000, 2006) | ||
G218 | G218 | Pr: H bond (main chain) | G→R | (Yang et al., 2008) |
A/BRefers to the subunits of the asymmetric unit in the crystal structure.