Table 4.
Insert sequence and their location detected by ISFinder.
| Isolate ID | Contigs Information | Resistance Information | Insert Sequence Information | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Contigs ID | Contigs Length/Bp | AMR Genes | Position on the Contigs | Insert Sequence ID | Insert Length/Bp | Insert Position | IS Family | Accession | |
| J1E1 | 27 | 269,951 | blaCTX-M-15 | 197172..198047 | ISEcp1 | 1656 | 195468..197123 | IS1380 | AJ242809 |
| J1E3 | 151 | 128,211 | blaCTX-M-15 | 86273..87148 | ISEcp1 | 1656 | 84569..86224 | IS1380 | AJ242809 |
| J1E4 | 28 | 128,728 | blaCTX-M-15 | 43925..44800 | ISEcp1 | 1656 | 42221..43876 | IS1380 | AJ242809 |
| J1G1 | 80 | 110,660 | blaCTX-M-14 | 83884..84759 | ISEcp1 | 1656 | 82186..83841 | IS1380 | AJ242809 |
| J2E2 | 31 | 289,403 | qnrS1 | 242382..243038 | ISKpn19 * | 2851 | 238783..241633 | ISKra4 | NC_010886 |
| blaCTX-M-15 | 247679..248554 | ISEcp1 * | 1656 | 248603..250258 | IS1380 | AJ242809 | |||
| J2E4 | 220 | 716,717 | qnrS1 | 555846..556502 | ISEcp1 | 1656 | 562067..563722 | IS1380 | AJ242809 |
| blaCTX-M-15 | 561143..562018 | ||||||||
* identification below 100%.