Table 1.
EGFR Exon 20 Insertion Mutant | D770_N771InsNPG | D770_N771InsSVD | V769_D770InsASV | H773_V774InsH | |||||
---|---|---|---|---|---|---|---|---|---|
Inhibitor | Properties | Chain A | Chain B | Chain A | Chain B | Chain A | Chain B | Chain A | Chain B |
Erlotinib | Binding Energy of inhibitor | −42.68 | −41.12 | −66.41 | −64.28 | −46.87 | −61.40 | −46.35 | −45.27 |
Binding Energy of ATP | −32.37 | −24.83 | −16.17 | −27.34 | −22.62 | −27.44 | −20.40 | −25.51 | |
DFG motif and αC-helix orientation * | In | In | In | In | In | In | In | In | |
Distance between Lys745 and Glu762 | 3.0 and 3.0 | 2.8 and 3.4 | 2.8 and 3.5 | 2.8 and 3.7 | 2.8 and 4.2 | 2.8 and 3.6 | 2.8 and 3.2 | 4.3 and 4.8 | |
Downward shift of P loop | No | No | No | yes | yes | yes | No | No | |
Poziotinib | Binding Energy of inhibitor | −59.55 | −70.14 | −48.17 | −61.34 | −69.83 | −52.96 | −60.82 | −63.21 |
Binding Energy of ATP | −20.56 | −25.61 | −22.40 | −26.60 | −33.42 | −11.91 | −53.86 | −33.76 | |
DFG motif and αC-helix orientation * | In | In | In | In | In | In | In | In | |
Distance between Lys745 and Glu762 | 3.1 and 3.0 | 3.3 and 3.0 | 2.9 and 5 | 2.9 and 3.7 | 3.5 and 5.6 | 2.9 and 3.1 | 2.8 and 4.6 | 2.8 and 3.3 | |
Downward shift of P loop | yes | yes | yes | No | No | No | No | No | |
TAS6417 | Binding Energy of inhibitor | −39.31 | −43.73 | −71.92 | −43.88 | −54.74 | −62.26 | −47.06 | −57.40 |
Binding Energy of ATP | −34.17 | −20.42 | −32.55 | −13.39 | −36.68 | −35.79 | −16.83 | −22.77 | |
DFG motif and αC-helix orientation * | In | In | In | In | In | In | In | In | |
Distance between Lys745 and Glu762 | 2.8 and 3.6 | 2.8 and 4.2 | 6.4 and 8.3 | 3.0 and 3.0 | 2.8 and 3.9 | 2.9 and 3.2 | 4.5 and 6.0 | 2.9 and 3.3 | |
Downward shift of P loop | No | yes | No | yes | yes | yes | No | No | |
CAPE | Binding Energy of inhibitor | −56.48 | −46.79 | −70.04 | −52.52 | −63.94 | −57.29 | −44.17 | −35.49 |
Binding Energy of ATP | −28.92 | −28.82 | −20.88 | −36.59 | −29.20 | −17.95 | −39.10 | −40.25 | |
DFG motif and αC-helix orientation * | In and Out | In | In | In | In | In | In | In | |
Distance between Lys745 and Glu762 | 10.6 and 12.7 | 2.9 and 3.0 | 3.4 and 4.8 | 2.8 and 3.1 | 2.8 and 4.2 | 2.8 and 5.0 | 3.9 and 4.4 | 2.8 and 3.5 | |
Downward shift of P loop | No | yes | No | No | yes | yes | No | No | |
Wi-A | Binding Energy of inhibitor | −86.90 | −46.23 | −30.44 | −25.60 | −53.51 | −45.11 | −50.64 | −42.62 |
Binding Energy of ATP | −45.06 | −30.59 | −56.43 | −62.40 | −20.97 | −38.84 | −23.17 | −35.66 | |
DFG motif and αC-helix orientation * | In | In | In | In | In | In | In | In | |
Distance between Lys745 and Glu762 | 7.3 and 9.2 | 3.2 and 4.2 | 4.1 and 5.8 | 4.1 and 5.8 | 2.8 and 4.6 | 2.8 and 3.9 | 4.9 and 6.0 | 2.8 and 4.3 | |
Downward shift of P loop | No | No | No | No | yes | yes | No | No | |
Wi-N | Binding Energy of inhibitor | −48.28 | −39.06 | −62.79 | −58.97 | −38.08 | −9.87 | −35.58 | −37.44 |
Binding Energy of ATP | −20.17 | −26.49 | −26.82 | −33.29 | −60.96 | −50.39 | −13.47 | −33.15 | |
DFG motif and αC-helix orientation * | In | In | In | In | In | In | In | In | |
Distance between Lys745 and Glu762 | 5.6 and 7.5 | 2.8 and 3.5 | 2.8 and 3.1 | 7.8 and 9.5 | 2.8 and 4.7 | 3.2 and 5.0 | 6.0 and 8.1 | 2.9 and 3.0 | |
Downward shift of P loop | No | Yes | No | Yes | Yes | Yes | No | No |
* ‘In’ refers to DFG and αC-helix inward conformation; ‘Out’ refers to DFG and αC-helix outward conformation.