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. 2021 Jan 26;11(2):160. doi: 10.3390/biom11020160

Table 1.

Influence of compounds on different structural properties of EGFR exon 20 insertion mutants as ATP competitive inhibitors. The binding free energy is given in Kcal/mol and the distances are in Å.

EGFR Exon 20 Insertion Mutant D770_N771InsNPG D770_N771InsSVD V769_D770InsASV H773_V774InsH
Inhibitor Properties Chain A Chain B Chain A Chain B Chain A Chain B Chain A Chain B
Erlotinib Binding Energy of inhibitor −42.68 −41.12 −66.41 −64.28 −46.87 −61.40 −46.35 −45.27
Binding Energy of ATP −32.37 −24.83 −16.17 −27.34 −22.62 −27.44 −20.40 −25.51
DFG motif and αC-helix orientation * In In In In In In In In
Distance between Lys745 and Glu762 3.0 and 3.0 2.8 and 3.4 2.8 and 3.5 2.8 and 3.7 2.8 and 4.2 2.8 and 3.6 2.8 and 3.2 4.3 and 4.8
Downward shift of P loop No No No yes yes yes No No
Poziotinib Binding Energy of inhibitor −59.55 −70.14 −48.17 −61.34 −69.83 −52.96 −60.82 −63.21
Binding Energy of ATP −20.56 −25.61 −22.40 −26.60 −33.42 −11.91 −53.86 −33.76
DFG motif and αC-helix orientation * In In In In In In In In
Distance between Lys745 and Glu762 3.1 and 3.0 3.3 and 3.0 2.9 and 5 2.9 and 3.7 3.5 and 5.6 2.9 and 3.1 2.8 and 4.6 2.8 and 3.3
Downward shift of P loop yes yes yes No No No No No
TAS6417 Binding Energy of inhibitor −39.31 −43.73 −71.92 −43.88 −54.74 −62.26 −47.06 −57.40
Binding Energy of ATP −34.17 −20.42 −32.55 −13.39 −36.68 −35.79 −16.83 −22.77
DFG motif and αC-helix orientation * In In In In In In In In
Distance between Lys745 and Glu762 2.8 and 3.6 2.8 and 4.2 6.4 and 8.3 3.0 and 3.0 2.8 and 3.9 2.9 and 3.2 4.5 and 6.0 2.9 and 3.3
Downward shift of P loop No yes No yes yes yes No No
CAPE Binding Energy of inhibitor −56.48 −46.79 −70.04 −52.52 −63.94 −57.29 −44.17 −35.49
Binding Energy of ATP −28.92 −28.82 −20.88 −36.59 −29.20 −17.95 −39.10 −40.25
DFG motif and αC-helix orientation * In and Out In In In In In In In
Distance between Lys745 and Glu762 10.6 and 12.7 2.9 and 3.0 3.4 and 4.8 2.8 and 3.1 2.8 and 4.2 2.8 and 5.0 3.9 and 4.4 2.8 and 3.5
Downward shift of P loop No yes No No yes yes No No
Wi-A Binding Energy of inhibitor −86.90 −46.23 −30.44 −25.60 −53.51 −45.11 −50.64 −42.62
Binding Energy of ATP −45.06 −30.59 −56.43 −62.40 −20.97 −38.84 −23.17 −35.66
DFG motif and αC-helix orientation * In In In In In In In In
Distance between Lys745 and Glu762 7.3 and 9.2 3.2 and 4.2 4.1 and 5.8 4.1 and 5.8 2.8 and 4.6 2.8 and 3.9 4.9 and 6.0 2.8 and 4.3
Downward shift of P loop No No No No yes yes No No
Wi-N Binding Energy of inhibitor −48.28 −39.06 −62.79 −58.97 −38.08 −9.87 −35.58 −37.44
Binding Energy of ATP −20.17 −26.49 −26.82 −33.29 −60.96 −50.39 −13.47 −33.15
DFG motif and αC-helix orientation * In In In In In In In In
Distance between Lys745 and Glu762 5.6 and 7.5 2.8 and 3.5 2.8 and 3.1 7.8 and 9.5 2.8 and 4.7 3.2 and 5.0 6.0 and 8.1 2.9 and 3.0
Downward shift of P loop No Yes No Yes Yes Yes No No

* ‘In’ refers to DFG and αC-helix inward conformation; ‘Out’ refers to DFG and αC-helix outward conformation.