Table 3.
M1 and M2 ST398 MSSA core genome and whole genome SNPomes.
| SNPs Content on LA ST398 MRSA RefGen Mapping (CP003045.1) |
SNPs Content on Human-Animal Independent ST398 MSSA RefGen Mapping (AM990992.1) |
||||
|---|---|---|---|---|---|
| M1 | M2 | M1 | M2 | ||
| cgSNPomes | cgSNPs vs RefGen | 852 | 851 | 265 | 264 |
| cgSNPs M1 vs M2 | 1 | 1 | 1 | 1 | |
| wgSNPomes | Variant Rate | 1318 | 1401 | 531 | 1890 |
| Variant Number | 2178 | 2091 | 5106 | 1436 | |
| MISSENSE SNPs (%) | 45.846 | 44.88 | 58.3106 | 57.164 | |
| NONSENSE SNPs (%) | 2.116 | 1.365 | 2.914 | 4.874 | |
| SILENT SNPs (%) | 52.08 | 53.74 | 38.98 | 37.962 | |
| HI Eff SNPs (%) | 4.02 | 3.44 | 1.35 | 6.163 | |
| MI Eff SNPs (%) | 33.501 | 33.01 | 6.53 | 27.978 | |
| LI Eff SNPs (%) | 34.87 | 35.323 | 4.32 | 18.09 | |
Legend: cgSNPome = core genome SNPome, wgSNPomev: whole genome SNPome, HI EFF = High impact effect; MI = moderate impact effect, LI Eff = Low impact effect.