Table 1.

Microbial genes that are differentially abundant in dcl234 and Col-0 root microbiomes

Protein	Name	Function (Uniprot)	logFC (dcl234/Col-0)	p value	EC_ number
Beta-glucuronidase	uidA	Carbohydrate metabolic process	7.91	1.05E-31	3.2.1.31
Alanine dehydrogenase	AlaDH	Oxidation-reduction process	10.75	8.4E-105	1.4.1.1
Aminoglycoside 3′-Phosphotransferase	neo	Kanamycin-kinase, antibiotic activity	11.21	1.3E-150	2.7.1.95
Aminoglycoside 3′-Phosphotransferase	aphA	Kanamycin-kinase, antibiotic activity	9.52	3.35E-52	2.7.1.95
Ornithine carbamoyltransferase	argF	Arginine biosynthetic process via ornithine; citrulline biosynthetic process	− 3.30	1.09E-06	2.1.3.3
2-Keto-4-carboxy-3-hexenedioate hydratase	ligJ	Lignin catabolic process	− 3.15	2.52E-07	4.2.1.-
Glutamyl-tRNA(Gln) amidotransferase subunit A	gatA	Aspartyl-tRNA aminoacylation	− 3.33	5.23E-07	6.3.5.7