Mitochondrial mechanisms of major neurodegenerative diseases including Alzheimer’s disease (AD), Parkinson’s disease (PD), Huntington’s disease (HD), and amyotrophic lateral sclerosis (ALS). Ovals and rectangles are molecules and pathways, respectively. Sharp/blunt arrows represent positive/negative interactions. Interactions that are enhanced in the disease condition are colored in blue, while the diminished are colored in red. Pathways in a single mitochondrion scale are colored in black and pathways in a population scale are colored in green. Interactions that have not been computationally modeled are represented in dashed lines. Aβ, amyloid-beta; ROS, reactive oxygen species; OXPHOS, oxidative phosphorylation; mtPTP, mitochondrial permeability transition pore; mα-Syn, mutant α-synuclein; DA, dopamine; TCA, tricarboxylic acid; mHTT, mutant huntingtin; 3NP, 3-nitropropionic acid; mSOD1, mutant superoxide dismutase 1.