Table 2.
Common-outlier region pairs between SweeD and RAiSD based on a maximal distance of 0.4 kb.
| Population (No. of Sequences) | SweeD Outlier Region | RAiSD Outlier Region | Description |
|---|---|---|---|
|
All (1601) |
5276–5463 | 5048–5679 | Non-structural protein 3 (nsp3) |
| 7102–7470 | 7380–7842 | Non-structural protein 3 (nsp3) | |
| 23,043–23,073 | 23,440–23,469 | Spike protein S1/RBD | |
| 24,749–24,773 | 24,762–24,814 | Spike protein S2 | |
|
Europe (811) |
5094–5352 | 4695–5089 | Non-structural protein 3 (nsp3) |
| 21,520–21,550 | 21,157–21,339 | Non-structural protein 16 (nsp16) | |
| 22,463–22,967 | 22,687–22,852 | Spike protein S1 | |
|
Asia (385) |
7356–7815 | 7578–8182 | Non-structural protein 3 (nsp3) |
| 16,057–17,022 | 15,925–16,714 | nsp12/nsp13 | |
|
North America (600) |
8187–8337 | 7969–8220 | nsp3 |
| 12,523 | 12,450–12,923 | nsp8/nsp9 | |
| 13,566–13,691 | 13,192–13,297 | nsp12/nsp10 | |
| 15,147–15,201 | 15,248–15,383 | nsp12 | |
| 23,166 | 23,398–23,427 | Spike protein S1 |