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. 2021 Feb 5;7(2):117. doi: 10.3390/jof7020117

Figure 2.

Figure 2

Phylogram generated from maximum likelihood analysis based on combined large subunit (LSU), small subunit (SSU), internal transcribed spacers (ITS), and TEF1-α sequence data representing the species of Melanommataceae. Related sequences are taken from Hyde et al. [57]. Sixty-two taxa were included in the combined analyses, which comprised 3433 characters (LSU = 982 bp, SSU = 963 bp, ITS = 545 bp, TEF1-α = 943) after alignment. The best scoring RAxML tree with a final likelihood value of -18023.445951 is presented. The matrix had 1115 distinct alignment patterns, with 44.01% of undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.244338, C = 0.242233, G = 0.271538, T = 0.241891; substitution rates: AC = 1.712430, AG = 2.882169, AT = 1.678717, CG = 0.989358, CT = 10.389868, GT = 1.000000; gamma distribution shape parameter α = 0.154096. Bootstrap support values for ML equal to or greater than 75% and BYPP equal to or greater than 0.95 are given above the nodes. Cyclothyriella rubronotata (CBS 419.85; TR9) in Cyclothyriellaceae were used as the outgroup taxa. The newly generated sequence is indicated in blue. The ex-type strains are indicated in bold.