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. 2021 Feb 5;7(2):117. doi: 10.3390/jof7020117

Figure 4.

Figure 4

Phylogram generated from maximum likelihood analysis based on combined LSU, SSU, ITS, TEF1-α, and RPB2 sequence data representing the species of Pleosporales. Related sequences are taken from Tibpromma et al. [62]. Fifty taxa were included in the combined analyses, which comprised 6314 characters (LSU = 1116, SSU = 988, ITS = 2438, TEF1-α = 678, RPB2 = 1094) after alignment. The best scoring RAxML tree with a final likelihood value of −22606.054905 is presented. The matrix had 2273 distinct alignment patterns, with 50.65% of undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.249087, C = 0.252571, G = 0.272240, T = 0.226102; substitution rates: AC = 1.279443, AG = 3.002197, AT = 1.311809, CG = 1.122167, CT = 6.076550, GT = 1.000000; gamma distribution shape parameter α = 0.234175. Bootstrap support values for ML equal to or greater than 75% and BYPP equal to or greater than 0.95 are given above the nodes. Preussia funiculata CBS 659.74 and Sporormiella minima CBS 524.50 in Sporormiaceae were used as the outgroup taxa. The newly generated sequence is indicated in blue. The ex-type strains are indicated in bold.