Table 2.
QTL location based on different methods using SLC family and SLL family mapping populations. For each QTL, chromosome, start and end position, location of the most significant value of the region (Max) and LOD, adjusted p-value or ΔSNP value for that location are reported.
| QTL Mapping (SLC Family) | |||||
| Phenotype | Chr | Start | Max | End | LOD |
| Trichome density 6th week | SL2.50ch09 | 2,055,839 | 2,542,786 | 4,250,325 | 6.24 |
| SL2.50ch11 | 54,298,873 | 56,297,460 | 56,297,460 | 5.62 | |
| Trichome density 7th week | SL2.50ch09 | 2,078,180 | 3,756,370 | 4,250,325 | 6.33 |
| SL2.50ch11 | 55,093,420 | 56,297,460 | 56,297,460 | 3.69 | |
| Trichome density 8th week | SL2.50ch09 | 1,966,640 | 2,309,105 | 4,371,756 | 5.36 |
| SL2.50ch11 | 55,548,327 | 56,297,460 | 56,297,460 | 3.83 | |
| Association (SLC Family) | |||||
| Phenotype | Chromosome | Start | Max | End | Adj. pval. |
| Trichome density 6th week | SL2.50ch09 | 2,309,105 | 2,542,786 | 2,545,171 | 0.0090 |
| Trichome density 7th week | SL2.50ch09 | 2,078,180 | 3,727,914 | 4,969,831 | 7.7·10−6 |
| Trichome density 8th week | SL2.50ch06 | 8008 | 154,414 | 615,838 | 0.0002 |
| SL2.50ch09 | 2,069,769 | 2,492,691 | 5,693,896 | 4.6·10−5 | |
| QTLseq | |||||
| Mapping Population | Chromosome | Start | Max | End | ΔSNP |
| SLC family | SL2.50ch09 | 3,042,382 | 3,966,023 | 4,560,795 | 0.57 |
| SLL family | SL2.50ch05 | 9,189,958 | 33,460,771 | 59,293,229 | 0.52 |
| SL2.50ch06 | 23,628 | 23,628 | 943,353 | 0.46 | |
| SL2.50ch09 | 2,105,569 | 2,865,099 | 4,800,975 | 0.56 | |