Table 2.
Organism-level microbiome phenotype prediction.
| Mediterranean Diet n = 21 |
Bariatric Surgery n = 22 |
VLCKD n = 18 |
|
|---|---|---|---|
| Aerobic | |||
| Pre | 0.0668 (0.04514) | 0.0621 (0.0480) | 0.0932 (0.0673) |
| Post | 0.0453 (0.0334) | 0.0499 (0.0362) | 0.0668 (0.0509) |
| Change | −0.0215 (0.0413) | −0.0144 (0.0571) | −0.0237 (0.0631) |
| Anaerobic | |||
| Pre | 0.8007 (0.1198) | 0.8294 (0.1133) | 0.7127 (0.1307) |
| Post | 0.8074 (0.1017) | 0.7968 (0.1348) | 0.7505 (0.1107) |
| Change | 0.0067 (0.1089) | −0.0269 (0.1642) | 0.0406 (0.1448) |
| Contains Mobile Elements | |||
| Pre | 0.1518 (0.0865) | 0.1291 (0.0611) | 0.2026 (0.1305) |
| Post | 0.1152 (0.0486) | 0.2012 (0.1746) | 0.2427 (0.1094) |
| Change | −0.0365 (0.0842) a | 0.0672 (0.1658) b | 0.0402 (0.1117) ab |
| Facultatively Anaerobic | |||
| Pre | 0.0742 (0.0933) | 0.0532 (0.0567) | 0.0899 (0.1252) |
| Post | 0.0669 (0.0711) | 0.1109 (0.1463) | 0.0834 (0.0730) |
| Change | −0.0072 (0.0723) | 0.0561 (0.1600) | −0.0117 (0.1093) |
| Form Biofilms | |||
| Pre | 0.1735 (0.0900) | 0.1665 (0.1184) | 0.2947 (0.1391) |
| Post | 0.1495 (0.0739) | 0.1914 (0.1481) | 0.2464 (0.1036) * |
| Change | −0.0240 (0.0881) | 0.0203 (0.1562) | −0.0584 (0.1171) |
| Gram Negative | |||
| Pre | 0.6103 (0.1102) | 0.5516 (0.1705) | 0.6545 (0.0707) |
| Post | 0.5561 (0.0872) | 0.5684 (0.1867) | 0.6305 (0.1098) |
| Change | −0.0542 (0.1167) | −0.0012 (0.2010) | −0.0224 (0.08892) |
| Gram Positive | |||
| Pre | 0.3896 (0.1102) | 0.4483 (0.1705) | 0.3454 (0.0707) |
| Post | 0.4438 (0.0872) | 0.4315 (0.1867) | 0.3694 (0.1098) |
| Change | 0.0542 (0.1167) | 0.0012 (0.2010) | 0.0224 (0.0889) |
| Potentially Pathogenic | |||
| Pre | 0.6429 (0.1171) | 0.5674 (0.1499) | 0.6053 (0.1164) |
| Post | 0.5874 (0.1167) * | 0.6116 (0.1621) | 0.6145 (0.0887) |
| Change | −0.0555 (0.1280) | 0.0305 (0.1768) | 0.0142 (0.1466) |
| Stress Tolerant | |||
| Pre | 0.1063 (0.0863) | 0.0947 (0.0557) | 0.1726 (0.1306) |
| Post | 0.0695 (0.0594) * | 0.1360 (0.1535) | 0.1182 (0.0859) |
| Change | −0.0368 (0.0575) ab | 0.0376 (0.1501) b | −0.0574 (0.1232) a |
Differences between the groups were analyzed by a one-way ANOVA followed by a Duncan’s post hoc test. Values with different uppercase letters (a,b indicate statistically significant difference between the groups (p < 0.05) at Duncan’s test. Wilcoxon signed-rank test was used to calculate differences between baseline and the end of the intervention: * p < 0.05.