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. Author manuscript; available in PMC: 2022 Oct 1.
Published in final edited form as: J Biomol Struct Dyn. 2020 Jul 28;39(16):6084–6098. doi: 10.1080/07391102.2020.1797539

Figure 7: Molecular Dynamics represented through RMSD Plots.

Figure 7:

The red-colored lines plot RMSD values of the HLA molecule from six complex structures bound with the original peptide ligand found in PDB, while the blue-colored lines plot the RMSD values of the HLA molecule in the complex bound with the predicted epitopes. The six complex structures found in PDB include four MHC Class I antigens (A-D, see Table 1) and two MHC Class II antigens (E-F, see Table 2).