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The red-colored lines plot RMSF values of the HLA molecules from six complex structures bound with the original peptide ligands found in PDB, while the blue-colored lines plot RMSF values of the HLA molecules in the complexes bound with the predicted epitopes. The six complex structures contain four MHC Class I antigens (A-D, see Table 1) and two MHC Class II antigens (E-F, see Table 2).
