. Author manuscript; available in PMC: 2022 Oct 1.

Published in final edited form as: J Biomol Struct Dyn. 2020 Jul 28;39(16):6084–6098. doi: 10.1080/07391102.2020.1797539

Table 2:

Top MHC-II-bound epitopes identified from the antigen (* represents different alleles).

Peptide	Allele	Allele PDB ID	IEDB	NetMHC 4.0	NetMHC Core
TQNDTGFYTLQVIKS	HLA-DRB1*11:01	6CPN	Yes	Yes	FYTLQVIKS
QQLFGYSWYKGERVD	HLA-DRB1*09:01	n/a	Yes	Yes	YSWYKGERV
VDGNRQIVGYAIGTQ	HLA-DRB1*08:01	n/a	Yes	n/a
AEGKEVLLLVHNLPQ	HLA-DRB1*04:04	6BIY	Yes	Yes	VLLLVHNLP
KEVLLLVHNLPQQLF	HLA-DRB4*01:03	n/a	Yes	Yes	LLLVHNLPQ
AEGKEVLLLVHNLPQ	HLA-DRB1*04:02	n/a	Yes	Yes	LLLVHNLPQ
GKEVLLLVHNLPQQL	HLA-DRB1*13:02	n/a	Yes	Yes	LVHNLPQQL